Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0047
         (284 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   1.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   1.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   3.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   3.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   3.9  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   6.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    19   9.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   9.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                19   9.0  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    19   9.0  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    19   9.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 130 PDLSAASSGHFGLPRRTLVFK 68
           PDL+  S G  GLP   L  +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 199 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 116
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 176 RIPWNSNAQAEKKTLPGPLG 117
           +IPW+ N +A  K   G  G
Sbjct: 334 QIPWDKNVEALAKWANGQTG 353


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 85  DGVTQSGLKTPPRGPG 132
           DG     L +PPR PG
Sbjct: 128 DGPPSVSLSSPPREPG 143



 Score = 20.6 bits (41), Expect = 3.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 78  SFLKTRERLLKRFRCRVPE 22
           S LKT ++L  +  C VPE
Sbjct: 107 SLLKTADQLKIKGLCEVPE 125


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 112 TPPRGPGRV 138
           +PPRGPG V
Sbjct: 397 SPPRGPGGV 405


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 81  VRRGNPKWPEDAAERSGK 134
           VRR +P W +   E+  K
Sbjct: 169 VRREHPFWDDQRVEQEAK 186


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 134 LPGPLGGVFRPL 99
           +PG LGG+F  L
Sbjct: 337 MPGILGGIFGAL 348


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -2

Query: 223 PQMRCSSRSEPYLPSIGFH 167
           P   C    + YLPS G H
Sbjct: 230 PTFLCKGDGKWYLPSGGCH 248


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = -1

Query: 230 DTAANAVLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGGVF 108
           D  ++ ++ A   I  FY  P  +  +  K+  P P   ++
Sbjct: 198 DFGSSVLIGAPNEIDKFYGTPGYTAPEVIKQNRPTPAADIY 238


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 178 IGFHGTRTLRQKRKLFPDLSAASSGHFG 95
           +GFHG R  R    ++   S+     FG
Sbjct: 257 MGFHGMRGKRDAAGIYGSNSSTVGTIFG 284


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 178 IGFHGTRTLRQKRKLFPDLSAASSGHFG 95
           +GFHG R  R    ++   S+     FG
Sbjct: 257 MGFHGMRGKRDAAGIYGSNSSTVGTIFG 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,938
Number of Sequences: 438
Number of extensions: 1946
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)