Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0045
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    29   0.55 
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    27   3.0  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   3.9  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   5.2  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.0  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   9.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    22   9.8  

>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 115 VQTTVKKIHAYSHHLFALRTL 177
           ++  VKKIH ++H +F LRTL
Sbjct: 63  LKVAVKKIHPFNHPVFCLRTL 83


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = +1

Query: 94  RTVLWYVVQTTV-----KKIHAYSHHLFAL 168
           R + WY + TT+     + I+AY HHLF +
Sbjct: 109 RFINWYFLMTTLYYAYGESIYAYFHHLFIM 138


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 58  IFIMLVACVASXRTVLWYVVQTTVKK--IHAYSHHLFAL 168
           +F M  ACV    T LW   + T++K  IHA S   F +
Sbjct: 158 LFYMCRACVIYPITPLWDAKERTMRKATIHALSRIFFLI 196


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 144 IQPPLVCPKNTEHRARHAGKCACCPACVTLLGEG 245
           + PPL  PK+  HR   AG+       + LL +G
Sbjct: 334 LDPPLD-PKSFSHRCGRAGRAGRAGVAIVLLNDG 366


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 61  FIMLVACVASXRTVLWYVV 117
           FI+LV C+AS  +  W V+
Sbjct: 470 FIILVVCIASLYSAFWPVI 488


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 411 IIFRTGRDRSIASLYFPANENDYTSLVQTLLMHLR 307
           +I + G + S+ +LY P  +ND  S+V    M  R
Sbjct: 230 LICKGGTNISLKTLYMPLLKNDLGSIVDIATMSTR 264


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 21.8 bits (44), Expect(2) = 9.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 146 YAWIFFTVVCTTYQSTV 96
           Y   FF++ C  YQS +
Sbjct: 540 YVHFFFSIGCVAYQSFI 556



 Score = 21.0 bits (42), Expect(2) = 9.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 83  THATSIIKINVFILKFLNTFLVIVLS 6
           T  ++ + I VFI KF+ ++  + LS
Sbjct: 593 TLLSAALWITVFIAKFVESYYFLTLS 618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,431
Number of Sequences: 5004
Number of extensions: 53041
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)