Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0045
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0002 - 15280292-15281550,15282714-15282840                       28   5.3  
01_01_0522 - 3834551-3835451,3835992-3836572                           28   5.3  
11_01_0370 + 2814888-2814979,2815450-2815620,2815753-2815834,281...    28   7.0  
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948...    28   7.0  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    28   7.0  

>06_03_0002 - 15280292-15281550,15282714-15282840
          Length = 461

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = +2

Query: 197 WKVCLLSRLCNFTW*RCNLQIYSKELGETPSAVCKEPLKCIKRVCTKLV*SFSLAGKYKL 376
           W+V LL   C        +  Y   L   P        +C    C + V  + +AG+++ 
Sbjct: 158 WRVVLLCTECLSLVRSAAVCSYCLSLDNLPPEDSSVTCRC----CNRCVHPYCIAGEHRA 213

Query: 377 AILLSRPVRNIICV 418
           A++    V N ICV
Sbjct: 214 ALIQPIDVENFICV 227


>01_01_0522 - 3834551-3835451,3835992-3836572
          Length = 493

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +3

Query: 138 PCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEG-ATCRFIRRN*AKPPPLCVRSLSN 314
           P IQP L C     H+  HA +CA   A     G+G           A+P  + V  ++ 
Sbjct: 271 PTIQPVLSCIFRGVHKCHHAKECAGGGAAAGNNGDGDGNDEEAETETAEPEVVVVEPVAA 330

Query: 315 ASKEF 329
            SK F
Sbjct: 331 RSKSF 335


>11_01_0370 +
           2814888-2814979,2815450-2815620,2815753-2815834,
           2816275-2816316,2816397-2816456,2816817-2816913,
           2817382-2819024,2819155-2819256,2819369-2819509,
           2819625-2819750,2819935-2820096
          Length = 905

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -1

Query: 228 LHKRDNKHTFQRVWRDAQCS*GKQVVAVCMDFFHSSLYHIPKHRTL*RNACHQHY 64
           ++ + +    Q+V+RD Q     Q +A+  D   SSL  + K   L  N     Y
Sbjct: 259 VYSKPDVRFIQQVYRDGQLGSNAQSIAMSSDLISSSLRSVQKQPLLMNNISQLEY 313


>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
            14794906-14794986,14795078-14795147,14795267-14795337,
            14795427-14795594,14796030-14796074,14796449-14796511,
            14796594-14796869,14797858-14797971,14798099-14798225,
            14798315-14798484,14798743-14798841,14799577-14799630,
            14801487-14801522,14801741-14801844,14801952-14802186,
            14802377-14802609,14802846-14803346,14803422-14803716,
            14805796-14805881,14806952-14807064,14807303-14807385,
            14808014-14808866,14809215-14809364,14809963-14811146
          Length = 1854

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
 Frame = +3

Query: 45   NENVDFYNAGGM--RCVXAYGALVCGTDYC-EKNPCIQPPLVCPKNTEHRARHAGKCACC 215
            +E VD  N  G    C   Y      TD C + N C Q    CPK    R         C
Sbjct: 1380 SECVDSINGPGYLCNCTLGYHGNPYITDGCIDVNECEQNQSPCPKGATCRNTEGWYHCSC 1439

Query: 216  PACVTLLGEGATC 254
            P    L  E  TC
Sbjct: 1440 PVGRKLAKETNTC 1452


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 156 LVCPKNTEHRARHAGKCACCP 218
           L C K++  R  HAGKC  CP
Sbjct: 313 LQCGKHSCERGCHAGKCGGCP 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,077,376
Number of Sequences: 37544
Number of extensions: 328281
Number of successful extensions: 735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)