Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0045
(630 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 35 0.063
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0) 33 0.19
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19) 33 0.25
SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 31 0.77
SB_44384| Best HMM Match : Kazal_1 (HMM E-Value=1.4e-21) 29 2.4
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13) 29 2.4
SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_33512| Best HMM Match : Kazal_1 (HMM E-Value=2.6e-20) 29 3.1
SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 4.1
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_45116| Best HMM Match : EGF (HMM E-Value=0) 28 5.4
SB_8425| Best HMM Match : EGF (HMM E-Value=0) 28 5.4
SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_58026| Best HMM Match : ANF_receptor (HMM E-Value=0) 28 7.2
SB_36366| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_48390| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12) 27 9.5
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 34.7 bits (76), Expect = 0.063
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Frame = +3
Query: 108 VCGTDYCE-KNPCIQPPLVCPKNTEHRARHAGKCACC---------PACVTLLGEGATC 254
VCG+D +N C L CPKN +H G CA C CVT L + A C
Sbjct: 1157 VCGSDKVSYRNKCYMIALNCPKNKYVYVKHEGYCAPCRLAECHKVYAKCVTTLYQTARC 1215
Score = 31.9 bits (69), Expect = 0.44
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +3
Query: 102 ALVCGTD-YCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGE 242
A VCGTD + CI C R +HAG+C C V G+
Sbjct: 372 APVCGTDDRTYPSECIMKTSACADKKAVRVKHAGECGPCGTLVCTNGK 419
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Frame = +3
Query: 108 VCGTDYCEK-NPCIQPPLVCPKNTEHRARHAGKCACC 215
VCGTD N C+ C K H G C C
Sbjct: 229 VCGTDKSSYLNECVMKARACRKEKSVTVAHRGFCGAC 265
>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 293
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Frame = +3
Query: 108 VCGTD-YCEKNPCIQPPLVCPKNTEHRARHAGKCA-----CCPAC 224
VCG+D NPC+ VC N + R +H G C C P C
Sbjct: 129 VCGSDGKTYDNPCVFKIAVCQMNGQLRLKHRGACGSRPDKCAPIC 173
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +3
Query: 108 VCGTDYCE-KNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGA-TCRFI 263
VCG+D NPC+ C N +H GKC +C +G C+ I
Sbjct: 180 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKCGSSQSCEQKKCKGTKVCKMI 233
>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
Length = 173
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +3
Query: 108 VCGTDYCE-KNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGA-TCRFI 263
VCG+D NPC+ C N +H GKC +C +G C+ I
Sbjct: 37 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKCGSSQSCEQKKCKGTKVCKMI 90
>SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 88 SXRTVLWYVVQTTVKKIHAYSHHLFALRTLSIAPD 192
S R VLW V + ++ + A+S+ LF+L + + PD
Sbjct: 172 SERRVLWDVASSKIRAVTAFSNSLFSLNSNAFCPD 206
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 31.1 bits (67), Expect = 0.77
Identities = 16/53 (30%), Positives = 20/53 (37%)
Frame = +3
Query: 138 PCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCRFIRRN*AKPPPLC 296
P +PP C GKC C P C +G +F+ PPP C
Sbjct: 3183 PTTRPPCECKDGETGVLAEDGKCDCPPKC----DDGRKPKFVNNRWKCPPPEC 3231
>SB_44384| Best HMM Match : Kazal_1 (HMM E-Value=1.4e-21)
Length = 85
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 108 VCGTDYCE-KNPCIQPPLVCPKNTEHRARHAGKC 206
VCG+D NPC+ C N +H GKC
Sbjct: 51 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKC 84
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 159 VCPKNTEHRARHAGKCACCPACVTLLG-EGATCR 257
+CP NT KC CPA ++ G +GAT +
Sbjct: 2764 LCPPNTYQDQEQQSKCHMCPAGLSTFGLQGATSK 2797
>SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13)
Length = 340
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 159 VCPKNTEHRARHAGKCACCPACVTLLG-EGATCR 257
+CP NT KC CPA ++ G +GAT +
Sbjct: 65 LCPPNTYQDQEQQSKCHMCPAGLSTFGLQGATSK 98
>SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 29.1 bits (62), Expect = 3.1
Identities = 24/109 (22%), Positives = 43/109 (39%)
Frame = +2
Query: 278 ETPSAVCKEPLKCIKRVCTKLV*SFSLAGKYKLAILLSRPVRNIICVRNKIDNNMHCSKY 457
E + ++ LK + VC K + G + L ++ V + N+H + Y
Sbjct: 246 EKKKTIFRDLLKLLDEVCKKAKCHVLIGGDFNLKYAIAETVVTEVVQERSNQYNLHTNGY 305
Query: 458 RNLKLKNMNF**TEQKRMK*YVLYR*PCQDIGTMYVTRRV*LLYSHKSL 604
+N +K+M Y +Y P +D+ + V L+ HK L
Sbjct: 306 QN----------KPRKKMVDYFMYNGPQEDVRNVRVGNAT-DLFDHKPL 343
>SB_33512| Best HMM Match : Kazal_1 (HMM E-Value=2.6e-20)
Length = 87
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +3
Query: 108 VCGTDY-CEKNPCIQPPLVCPKNTEHRARHAGKCACCP 218
VCG+D N C+ C NT R G C CP
Sbjct: 10 VCGSDNNTYDNECLMRQQACVANTTVAVRRKGDCEPCP 47
>SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 320
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +3
Query: 108 VCGTDY-CEKNPCIQPPLVCPKNTEHRARHAGKCACCP 218
VCGTD N C+ C N R G C CP
Sbjct: 172 VCGTDNNTYDNECLMRQQACVANATVAVRRKGHCEPCP 209
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 LVCGTDYCE-KNPCIQPPLVCPKNTEHRARHAGKCACC 215
LVCGTD N C+ C N+ + + G C C
Sbjct: 1519 LVCGTDNITYSNECLMKYQACRTNSALKVKRKGDCDVC 1556
>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
Length = 2023
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = +3
Query: 57 DFYNAGGMRCVXAYGALVCGTDY--CEKNPCI 146
D N+ CV Y L C TD C NPC+
Sbjct: 1163 DQVNSFSCTCVSGYTGLKCETDINECASNPCV 1194
>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
Length = 1955
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 144 IQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGA 248
++P L CPK T A C+ CP + G GA
Sbjct: 390 VEPCLPCPKGTYQTAIGQMSCSECPGTKSTHGPGA 424
>SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 75 GMRCVXAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAG 200
G+ YG Y EK+P + PP V PK+ AR G
Sbjct: 877 GVLSPPVYGKTFRLNGYNEKSPKVSPPPVKPKSYSPEARWCG 918
>SB_58026| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 850
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +3
Query: 114 GTDYCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATC 254
GT E C L CP+ T R A C+ CP E +C
Sbjct: 506 GTMQSESVACCWECLQCPEGTVTSIRGATNCSTCPVTQKSNRERTSC 552
>SB_36366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 443 HCSKYRNLKLKNMN 484
HCSKYRN+K K +N
Sbjct: 264 HCSKYRNIKQKYIN 277
>SB_48390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 135 NPCIQPPLVCPKNTEHRARHAGKCACCPACV 227
N C+ P L C N E+R R K CC + +
Sbjct: 162 NSCLNPFLYCLTNKEYR-REFTKLLCCKSAI 191
>SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12)
Length = 515
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = +3
Query: 45 NENVDFYNAGGMRCVXAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAG 200
++NV+ N GG YG C YC N P C N R + G
Sbjct: 88 SQNVNVRNCGGFYIYEIYGTPTCNLRYC-GNGGAGPSSCCNWNENIRILNCG 138
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,307,794
Number of Sequences: 59808
Number of extensions: 403706
Number of successful extensions: 1090
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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