Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0041
         (504 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4QBC3 Cluster: Putative uncharacterized protein; n=5; ...    33   4.8  

>UniRef50_Q4QBC3 Cluster: Putative uncharacterized protein; n=5;
           Trypanosomatidae|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 98

 Score = 32.7 bits (71), Expect = 4.8
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -1

Query: 246 RYSMNYRHGRRKNSMCTAGKK*NTTMYLLYYNHSKLCFQYDKNLLSSQSRSV 91
           R   NY  G  + SM +A ++    ++LLY +H KL F + +N +   SRS+
Sbjct: 17  RLQANYDEGLLRESMPSAERE-KRDLHLLYVSHDKLMFMF-QNAMEGYSRSL 66


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 444,739,054
Number of Sequences: 1657284
Number of extensions: 7866310
Number of successful extensions: 17247
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 16875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17239
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30110042232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)