Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0041
         (504 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   4.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.3  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   6.3  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   6.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 171 LLCSTFFPRCTYYFFF 218
           ++ +  F  CTYYF++
Sbjct: 90  IIFTVHFLLCTYYFYY 105



 Score = 21.0 bits (42), Expect = 6.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 358 LFFILNFITFCLFHFY 405
           LF+ +  I  C+++FY
Sbjct: 227 LFYCVLIILLCIYYFY 242



 Score = 20.6 bits (41), Expect = 8.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 352 THLFFILNFITFCLFHFY 405
           T+ F+    I  C+++FY
Sbjct: 100 TYYFYYAFIILLCVYYFY 117



 Score = 20.6 bits (41), Expect = 8.3
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +3

Query: 198 CTYYFFFYH 224
           C YYF++ H
Sbjct: 257 CIYYFYYMH 265


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
 Frame = +3

Query: 198 CTYYFFFYHADSSWSTEPGPGAN--PDGGIKKLFNFLC 305
           C Y   FY  ++ W++   P      + G  K F   C
Sbjct: 673 CFYENKFYRQEAQWTSSDNPCTTCFCENGNNKCFTMEC 710


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 352 THLFFILNFITFCLFHFYTKHNIT 423
           T  F++LNF     F   +KH +T
Sbjct: 118 TMSFYVLNFFGSIQFIIISKHWVT 141


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 358 LFFILNFITFCLF 396
           LFF+ NF+T  LF
Sbjct: 244 LFFLANFLTNLLF 256


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,031
Number of Sequences: 336
Number of extensions: 2363
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)