Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0041
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0029 - 27163121-27163818,27163992-27164067,27164184-271658...    28   4.9  
11_01_0534 + 4227838-4228001,4229034-4229151,4229593-4229752,422...    27   6.5  
11_01_0540 + 4269373-4269563,4269636-4269717,4269736-4269889,426...    27   8.6  

>05_07_0029 -
           27163121-27163818,27163992-27164067,27164184-27165896,
           27166285-27166364,27166516-27166684
          Length = 911

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 10  RNAAAATYCRLIEATTKILETNLRVRSHRPTLR 108
           R+ ++    RLIEA  K+LE  L+ R H    R
Sbjct: 202 RSVSSRNKVRLIEAAVKVLEPGLQSRHHHQARR 234


>11_01_0534 +
           4227838-4228001,4229034-4229151,4229593-4229752,
           4229901-4230027,4230899-4231037,4231119-4231301,
           4231395-4231464,4231550-4231662
          Length = 357

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 159 YYNHSKLCFQYDKNLLSSQSRSV*TDP*ISFQYFCCSLYKSTIS 28
           YY+       +D+  LS++   V  D   ++ YF    Y++TIS
Sbjct: 192 YYSPGSATLYFDRRSLSTKPMEVVFDSGSTYTYFSAQPYQATIS 235


>11_01_0540 +
           4269373-4269563,4269636-4269717,4269736-4269889,
           4269948-4269972,4270838-4270976,4271076-4271261,
           4271379-4271442,4271544-4271659
          Length = 318

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = -1

Query: 180 NTTMYLLYYNHSKLCFQYDKNLLSSQSRSV*TDP*ISFQYFCCSLYKST---ISGGGRVT 10
           N  M + YY+       +D++ L      V  D   ++ YF    Y++T   I GG   T
Sbjct: 146 NEPMLMNYYSPGSATLYFDRHSLGMNPMDVVFDSGSTYTYFTAQPYQATVYAIKGGLSST 205

Query: 9   TLQ 1
           +L+
Sbjct: 206 SLE 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,080,827
Number of Sequences: 37544
Number of extensions: 209174
Number of successful extensions: 378
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)