Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0041
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_14101| Best HMM Match : CHB_HEX_C (HMM E-Value=7.9)                 30   1.2  
SB_45990| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)                 29   2.9  

>SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 421 TNYPSTTMAENFRCVRADVDTN 486
           T YP  TMA N +C RA + TN
Sbjct: 5   TKYPRATMATNTKCSRATIATN 26


>SB_14101| Best HMM Match : CHB_HEX_C (HMM E-Value=7.9)
          Length = 321

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 421 TNYPSTTMAENFRCVRADVDTN 486
           T YP  TMA N +C RA + TN
Sbjct: 5   TKYPRATMATNTKCSRATIATN 26


>SB_45990| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)
          Length = 325

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 156 SIVSTLLCSTFFPRCTYYFFFYHADSSWSTEPGPGANPDGGIKKLFNFLCNF 311
           SIV  L   ++FP C YYF     D+ +     P       + KL  F  +F
Sbjct: 233 SIVIGLFVISWFPSCVYYFLKEVCDACYPPSFAPLEGIFNSLAKLLTFAGSF 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,927,581
Number of Sequences: 59808
Number of extensions: 250030
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)