Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0041
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   1.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   4.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.3  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.6  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.6  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 195 AGKK*NTTMYLLYYNHSKLCFQYDKN 118
           AGK  N TMY L  ++   C +Y+KN
Sbjct: 145 AGKS-NITMYDLKSHNDIYCEKYEKN 169


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 418 ITNYPSTTMAENFRCVRADVDTNAHAHL 501
           +T  P T  ++  R    +++ N  AHL
Sbjct: 37  VTKRPKTKKSQGSRTTHNELEKNRRAHL 64


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 364 FILNFITFCLFHFYTKHNITNYP 432
           +++  I+   F  YTK N+  YP
Sbjct: 166 WLIALISAIPFAIYTKVNLVEYP 188


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 122 KICFPLKVGLCERTLK 75
           K CF    GLC  TLK
Sbjct: 445 KCCFAQDDGLCPYTLK 460


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 98  RL*EESRFLSYWK 136
           R+ +E  FLSYW+
Sbjct: 62  RIPKEQGFLSYWR 74


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 98  RL*EESRFLSYWK 136
           R+ +E  FLSYW+
Sbjct: 62  RIPKEQGFLSYWR 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,443
Number of Sequences: 438
Number of extensions: 2358
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)