Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0039
         (413 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.87 
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_47275| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014)                 29   2.0  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   29   2.0  
SB_40185| Best HMM Match : WD40 (HMM E-Value=0)                        28   2.6  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.5  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         27   4.6  
SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)                    27   8.1  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               27   8.1  
SB_9526| Best HMM Match : Big_1 (HMM E-Value=1.8)                      27   8.1  

>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 129 SRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFGIIPR 269
           +R+  E +L + H L PP        +S   SA  +SA   F  IPR
Sbjct: 35  ARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPR 81


>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 84  DSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDS 188
           DS  ++DP G+RR++  F  E R V    L+  D+
Sbjct: 101 DSPPIKDPPGVRRKIEEFTIEQRAVNKRRLDLLDT 135


>SB_47275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +3

Query: 219 DSARLASALEAFGIIPRMVASHHRPLGRVHEPNVRNCGSSRTEQYYYRNDKPS 377
           D+  +++   AFG+ P M+ +HH  LG + +P + N   +R  +Y+  N + S
Sbjct: 51  DALFISTVHTAFGLTPEMLDNHH--LGFLSDPRLLNTAVTRA-KYHLTNCRRS 100


>SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
          Length = 1236

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 21/82 (25%), Positives = 34/82 (41%)
 Frame = +3

Query: 48   LRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSA 227
            LRS   RVKKKTD   +      +   + ++C++   +      P   G   +I+ P S 
Sbjct: 1121 LRSTSYRVKKKTDCYKVPSEVPDKTPTAAYDCDSSADEDDTPATPAPPGIPTAITDPPSR 1180

Query: 228  RLASALEAFGIIPRMVASHHRP 293
             +    +A     R + S H P
Sbjct: 1181 DVPPQSDADASETRAMDSSHCP 1202


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 219 DSARLASALEAFGIIPRMVASHHRPLGRVHEPNVRNCGSSRTEQY 353
           D+  +++   AFG+ P M+ +HH  LG + +P + N   +R + +
Sbjct: 711 DALFISTVHTAFGLTPEMLDNHH--LGFLSDPRLLNTAVTRAKYH 753


>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 503

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 349 CSVREEPQFRTFGSCTRPSG 290
           CS R  P+ R F +CT PSG
Sbjct: 437 CSARTPPRRRPFTACTSPSG 456


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 199  VEPRESGGSK-QCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRS 44
            +E  +S G + +CD TSR+S   R       F ++R++   F   + S   RS
Sbjct: 2037 IEDLDSFGQRDRCDGTSRISRQSRSRIETDVFPTKRNLSHSFKDVKTSESERS 2089


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +3

Query: 105  PNGLRRRVSRFECET----RLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 254
            PN LR R S F         L    CL PP++ G    I L D + LA    A+
Sbjct: 1246 PNDLRGRWSDFFSNLFQLEHLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299


>SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 350 LLSTRGTAVSDIWFMHSAERPVVRSYHPRDY 258
           LLS  G A++D+  +H A+ P   +Y P  Y
Sbjct: 151 LLSAFGMALADV--VHEAQEPCAHTYEPDSY 179


>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
          Length = 1931

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 36   LYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPP 182
            L  D+R++ A V    D++  RD  GL R +       + V+++C   P
Sbjct: 1349 LIVDIRAKFATVLGSVDNLGARDAQGLSRDILMLLRLAQDVQTYCASAP 1397


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -2

Query: 295  SGRWCEATIRGIMPNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 119
            SG +   T +  +    K + + AE+G D+L         ++Q   TS++  ++++TRR
Sbjct: 1013 SGNFKMDTAKSEIGGNFKMDTANAENGVDVLKTSASMVFNNEQFSATSQIKGTEKDTRR 1071


>SB_9526| Best HMM Match : Big_1 (HMM E-Value=1.8)
          Length = 649

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -2

Query: 295 SGRWCEATIRGIMPNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 119
           SG +   T +  +    K + + AE+G D+L         ++Q   TS++  ++++TRR
Sbjct: 232 SGNFKMDTAKSEIGGNFKMDTANAENGVDVLKTSASMVFNNEQFSATSQIKGTEKDTRR 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,468,249
Number of Sequences: 59808
Number of extensions: 271132
Number of successful extensions: 928
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)