Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0038
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   5.0  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF040650-3|ABE73333.1|  836|Caenorhabditis elegans Hypothetical ...    27   8.8  
AF040650-2|AAT81190.1|  939|Caenorhabditis elegans Hypothetical ...    27   8.8  
AF040650-1|AAB95011.1|  952|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 116 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 220
           +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 480 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 376
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  GNLRACCLPWMW*PFLRLPLR 161
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical
           protein T21B10.3 protein.
          Length = 1170

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 343 KTNRRRA-SRPKSLILMNLDNFCRSHGQVPARIFQMSALSTFDGSF 209
           K NR ++ +   S+I +N   FCR + QVP ++ Q+   ST +  F
Sbjct: 799 KENREQSLALQLSMIYLNCSYFCRLYQQVPIKLQQLMN-STLEKQF 843


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 438 SYSVTWITVVILELIHAIRTLTSDGMS 358
           SY+V+WIT       + IR + SDG++
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDGLT 80


>AF040650-3|ABE73333.1|  836|Caenorhabditis elegans Hypothetical
           protein T04B8.5c protein.
          Length = 836

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 187 RDNHGSRRNYHRKL--IRQTFERCVPVLDHAICKSYPDSSKLTTSDARPSVD 336
           +D H   R     L  +R   E  V   DH +C   P ++  + + A PSVD
Sbjct: 716 QDMHRRERQLKNMLQTLRIEGESSVVPWDHVVCHYQPPNATASANTATPSVD 767


>AF040650-2|AAT81190.1|  939|Caenorhabditis elegans Hypothetical
           protein T04B8.5b protein.
          Length = 939

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 187 RDNHGSRRNYHRKL--IRQTFERCVPVLDHAICKSYPDSSKLTTSDARPSVD 336
           +D H   R     L  +R   E  V   DH +C   P ++  + + A PSVD
Sbjct: 819 QDMHRRERQLKNMLQTLRIEGESSVVPWDHVVCHYQPPNATASANTATPSVD 870


>AF040650-1|AAB95011.1|  952|Caenorhabditis elegans Hypothetical
           protein T04B8.5a protein.
          Length = 952

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 187 RDNHGSRRNYHRKL--IRQTFERCVPVLDHAICKSYPDSSKLTTSDARPSVD 336
           +D H   R     L  +R   E  V   DH +C   P ++  + + A PSVD
Sbjct: 832 QDMHRRERQLKNMLQTLRIEGESSVVPWDHVVCHYQPPNATASANTATPSVD 883


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,665,022
Number of Sequences: 27780
Number of extensions: 259290
Number of successful extensions: 707
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)