Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0038
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   0.88 
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   2.7  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   2.7  
At3g25420.1 68416.m03161 serine carboxypeptidase S10 family prot...    27   6.2  
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu...    27   8.2  
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati...    27   8.2  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 292 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 387
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 110 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 211
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 119 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 226
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At3g25420.1 68416.m03161 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P37890) from [Oryza sativa]
          Length = 505

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = +1

Query: 187 RDNHGSRRNYHRKLIRQTFERCVPVLDHAICKSYPDSSKLTTSDARPSVDWF*SNKSTHP 366
           R + GS   YHR L    F   +   DH +C  Y  S   T +     VD +    S + 
Sbjct: 401 RHDTGSMIEYHRNLTLSGFRALIFSGDHDMCVPYTGSEAWTKAMGYKVVDEWRPWMSNNQ 460

Query: 367 ITG 375
           + G
Sbjct: 461 VAG 463


>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate
           mutase family protein similar to X4 protein GI:21386798,
           Y4 protein GI:21386800 from  [Silene dioica]; contains
           Pfam profiles PF00300: phosphoglycerate mutase family,
           PF01535: PPR repeat
          Length = 1053

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 334 RRRASRPKSLILMNLDNFCRSHGQVPARIFQMSALSTFDGSFCDYH 197
           +R   +P S+I  +L   CR H  V      ++ L   D S C Y+
Sbjct: 842 QRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYY 887


>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
           (PAUSED) contains Pfam profile: PF04150 exportin-t,
           identical to PAUSED gi:30909318
          Length = 988

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +2

Query: 263 LTMRSAKVIQIHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACISSRITTVIQ 424
           LT  + +V++ H+  RL +    ++  DL+  ++PS+  V+  C      +++Q
Sbjct: 304 LTGYAVEVLECHK--RLNSEDTKAVSMDLLNEVLPSVFYVMQKCEVDSTFSIVQ 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,088,849
Number of Sequences: 28952
Number of extensions: 254738
Number of successful extensions: 635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)