Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0037
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 33 0.31
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 32 0.40
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.93
06_01_0350 + 2534422-2535615 31 1.2
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 2.8
05_02_0120 - 6797954-6798970,6799466-6799951 29 2.8
05_06_0098 + 25560158-25560925 29 3.8
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 5.0
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 5.0
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 28 6.6
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 8.7
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 8.7
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 32.7 bits (71), Expect = 0.31
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = -3
Query: 262 HLGTCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRT-LR 86
HL G RH V SP R+ + RT P R + R PSI +RT +
Sbjct: 240 HLANVVNQGLTQTRHTSVRVSPSVGRTVSATRTTPATR-AGRGMSNAPSIQIPQSRTRFK 298
Query: 85 QKRKLFPDLSAASSGHFG 32
+ P + + FG
Sbjct: 299 RVGATSPGIVTLNDNQFG 316
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 32.3 bits (70), Expect = 0.40
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -3
Query: 295 LPTLFYRLEALHLGTCCGYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLP 119
+P+L +E HL G+ P+ H P P+ S R PP R S RSE P
Sbjct: 12 MPSLLADVEVSHLA---GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFP 68
Query: 118 SI 113
+
Sbjct: 69 PL 70
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.93
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -3
Query: 412 TNIDQTRH------RPHPLPVQTRHAPVLRANP 332
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 107 PWNSNAQAEKKTLPGPLGGVFRP 39
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 382 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 293
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>05_02_0120 - 6797954-6798970,6799466-6799951
Length = 500
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Frame = +1
Query: 349 PGRVGFGREADAAGA-----GSGRCSCVMFVLAS*YFNIMRPQKLYIFNMTLAKIVLRSD 513
PGR G GRE A G G GR +CV A ++ L F + L +D
Sbjct: 419 PGRFGAGREEGAGGLAYTAFGGGRHACVGEAFAYMQIKVIWSHLLRNFELQLVSPFPETD 478
Query: 514 W 516
W
Sbjct: 479 W 479
>05_06_0098 + 25560158-25560925
Length = 255
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 391 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLE 269
HRP P P + P L +P + V I P PT F + +
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQAD 71
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 376 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 263
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 388 RPHPLPVQTRHAPVLRANPYSEVTDP 311
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -3
Query: 430 LKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHL 257
+K + N+D RP P PV LRA PY P + + L + L ++++
Sbjct: 1 MKPSPAANLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYV 60
Query: 256 GTC 248
C
Sbjct: 61 NDC 63
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1
Query: 414 ARTSTRPGTGRIRFPSKPDTPRSSE 340
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 402 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 316
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,985,413
Number of Sequences: 37544
Number of extensions: 511092
Number of successful extensions: 1704
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1704
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -