Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0037
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    29   3.4  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    29   3.4  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    29   3.4  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    29   3.4  

>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 421  T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 308
            T +++ID T H PHP+ VQ   T+   V+   P   V+ P+
Sbjct: 904  TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -1

Query: 591 SRTKRNRHDFTARKIRGRPENAGPDPVRT*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 418
           S  KR       R+   RPE        + D   E   +    +R + +KI  LT  NE+
Sbjct: 506 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 563

Query: 417 NARTSTRPGTGRIRFPSKPDT 355
              TS++PG  R+  P+K DT
Sbjct: 564 RGETSSQPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -1

Query: 591 SRTKRNRHDFTARKIRGRPENAGPDPVRT*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 418
           S  KR       R+   RPE        + D   E   +    +R + +KI  LT  NE+
Sbjct: 475 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 532

Query: 417 NARTSTRPGTGRIRFPSKPDT 355
              TS++PG  R+  P+K DT
Sbjct: 533 RGETSSQPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -1

Query: 591 SRTKRNRHDFTARKIRGRPENAGPDPVRT*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 418
           S  KR       R+   RPE        + D   E   +    +R + +KI  LT  NE+
Sbjct: 506 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 563

Query: 417 NARTSTRPGTGRIRFPSKPDT 355
              TS++PG  R+  P+K DT
Sbjct: 564 RGETSSQPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -1

Query: 591 SRTKRNRHDFTARKIRGRPENAGPDPVRT*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 418
           S  KR       R+   RPE        + D   E   +    +R + +KI  LT  NE+
Sbjct: 475 SMKKRIARALIRRRSTTRPERGSSS--NSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 532

Query: 417 NARTSTRPGTGRIRFPSKPDT 355
              TS++PG  R+  P+K DT
Sbjct: 533 RGETSSQPGRDRLAPPNKTDT 553


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,720,337
Number of Sequences: 27780
Number of extensions: 395838
Number of successful extensions: 1225
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)