Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0034
         (626 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    44   0.003
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    32   9.8  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 44.0 bits (99), Expect = 0.003
 Identities = 23/42 (54%), Positives = 25/42 (59%)
 Frame = -2

Query: 382 MGDGNHSPSGGPYARLPTRAIKEKRKKNCFRLCIHYLLIIST 257
           MGDGNHSPSG PYA LPTRA  +      F +    LL  ST
Sbjct: 1   MGDGNHSPSGRPYASLPTRAKMKLTSLFIFVIVALSLLFSST 42


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = -1

Query: 422  RQRPGSAPSFAEVHGRR 372
            RQR GSAP  AEVHGRR
Sbjct: 970  RQRLGSAPGIAEVHGRR 986


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,379,182
Number of Sequences: 1657284
Number of extensions: 11152220
Number of successful extensions: 21628
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21621
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)