Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0034
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_9023| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)                      28   7.1  
SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)                  28   7.1  

>SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -2

Query: 457 WLANTRRAVRFVGSGLALPLALLKSMGDGNHSPSGG--PYARLPT 329
           W  +  R   F+ SG+ LP+  L S    +H PS G  P    PT
Sbjct: 75  WATSHHRVSHFLSSGIPLPIIGLSSHHRVSHFPSSGCLPIIGYPT 119


>SB_9023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 7   CTAAKFANECLTALHMRANIRTM*VAGIRVLANKW 111
           CT+AK  NE +  +H R    T  + G +VL+N W
Sbjct: 386 CTSAKTLNEHVVTVHYRQGSYTCPLCG-KVLSNNW 419


>SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)
          Length = 761

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -3

Query: 297 ASDSVYIIY**LVQC*NSTIIGCVNYTTRSCARQRTSGITSFDYYR 160
           ASD VYII+         T+  C N   R C R R+ G  SFD  R
Sbjct: 502 ASDRVYIIW-------KHTLRLCENLCDRLCHRLRSCGQISFDQVR 540


>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
          Length = 318

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -2

Query: 418 SGLALPLALLKSMGDGNHSPSGGPYARLPT 329
           SG+  PLA   S  D  H P GGP A  PT
Sbjct: 33  SGIFSPLASSTSASDSRHRPVGGP-AYSPT 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,899,727
Number of Sequences: 59808
Number of extensions: 351796
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)