Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0034
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39849-6|AAM81124.1|  642|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U39849-5|AAA81048.2|  663|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>U39849-6|AAM81124.1|  642|Caenorhabditis elegans Hypothetical
           protein C06A8.1b protein.
          Length = 642

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 379 PWTSAKLGAEPGRCLQT*PLAWCS 450
           PWT A+ G +P   L +  L WC+
Sbjct: 447 PWTEAETGVQPETSLISEQLVWCN 470


>U39849-5|AAA81048.2|  663|Caenorhabditis elegans Hypothetical
           protein C06A8.1a protein.
          Length = 663

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 379 PWTSAKLGAEPGRCLQT*PLAWCS 450
           PWT A+ G +P   L +  L WC+
Sbjct: 468 PWTEAETGVQPETSLISEQLVWCN 491


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,547,830
Number of Sequences: 27780
Number of extensions: 272468
Number of successful extensions: 551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)