Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0028
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 30 0.33
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 29 0.76
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 29 1.0
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.1
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 26 5.4
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 7.1
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 26 7.1
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 7.1
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 9.4
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 9.4
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 30.3 bits (65), Expect = 0.33
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 423 SGCGRCRVWSMFVRYVRFSELVF*YNAASKLYIF 524
+GCG+ VW +VR+V F E + LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 29.1 bits (62), Expect = 0.76
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 606 ARKIRGRPENAGPDPVRNVRRFSRV 532
AR I GRPEN G ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -3
Query: 301 DLLRIWVRTGATSPRTPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRK 122
D+LR+ R A +P PSP S S+E TP + +S+ P + + RTL+ K
Sbjct: 73 DILRMLSRALAKNP-VPSPAESESSERRHTP---QTNSQKSQKTPRLSSNKRRTLKNDAK 128
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 669 RSAQNWHGQGESDCLIKTKHCDGLAGVDA 755
R N G+ ++DCLI C + G+D+
Sbjct: 25 RGTLNSKGKNDNDCLIMCMRCRKVKGIDS 53
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 5.4
Identities = 22/90 (24%), Positives = 41/90 (45%)
Frame = -1
Query: 684 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVLR 505
SS+++ E S + +KP+R TA K + + ++ GP+ R + F+ + +
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQK 394
Query: 504 PHYIKILTR*NEHNARTSTRPGTGRIRFPS 415
I I+ R H+ + R G FP+
Sbjct: 395 GDIIDIVERSGSHDDWWTGRIGYREGIFPA 424
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -3
Query: 202 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 65
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 150 PWNPIEGRYGSEREEHRICGGVRILSADLENSGEGVRGDVAP 275
P+ P+EG Y + ++ HRI R A LE GV+ P
Sbjct: 3 PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -2
Query: 620 RHDLRLG-RSAEGRRTRVRIQSET*DDFRECHIKYIQF*GRIILKY*LAKTNITHE 456
+ D +LG + A + +V + S+ D +E H+KY+Q + L+ LAK +I E
Sbjct: 1053 KEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 460 TNIDQTRHRPHPLPVQTRHAPV 395
+N+D + PHP P Q PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 348 FPYLHYSID*RLFTLETCCGYGYEPARHL 262
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,493
Number of Sequences: 5004
Number of extensions: 72211
Number of successful extensions: 217
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -