Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0026
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.70 
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    28   1.6  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    27   2.1  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   5.0  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   5.0  
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    26   5.0  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.6  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    26   6.6  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   8.7  

>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 618 ARKIRGRPENAGPDPVRNVRRFSRV 544
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 162 PWNPIEGRYGSEREEHRICGGVRILSADLENQVRDVRGDVAP 287
           P+ P+EG Y + ++ HRI    R   A LE ++R V+    P
Sbjct: 3   PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -3

Query: 632  RHDLRLG-RSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHLLKY*LAKTNITHE 468
            + D +LG + A   + +V + S+  D  +E H+KY+Q    + L+  LAK +I  E
Sbjct: 1053 KEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -3

Query: 275 STYIPHLIFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQA 144
           STY P L   V     D   N     F  I+P+Y   WN  A A
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 435 SGCXRCRVWSMFVRYVRFSE 494
           +GC +  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 623 LRLGRSAEGRRTRVRIQSE-T*DDFRECHIKYIQFLRPHLLKY*LAKTNITHE 468
           +R G+S +    R+  ++    D F    +KY +F+RP  L+    K N+TH+
Sbjct: 136 IRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQ--KKANVTHK 186


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 214 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 77
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 696 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFS 550
           SS+++ E  S      +  +KP+R TA K + + ++ GP+  R +  F+
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFA 383


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 360 FPYLHYSID*RLFTLETCCGYGYEPARHL 274
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,203
Number of Sequences: 5004
Number of extensions: 67387
Number of successful extensions: 198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)