Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0025
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.64 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    28   1.5  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    28   1.5  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    27   2.6  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    27   2.6  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   3.4  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    26   4.5  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   4.5  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.5  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.0  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    26   6.0  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   7.9  

>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 610 ARKIRGRPENAGPDPVRNVRRFSRV 536
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 450 DPAPVASASRPNPTRPGPQSQSLFRSYGSNLPTS 349
           +PAPV+    P PTR  P+    FRS     P+S
Sbjct: 41  EPAPVSKKPLPPPTRRLPRKPLPFRSTSLQPPSS 74


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 427 SGCDRCRVWSMFVRYVRFSELVF*YNAAQKLYIF 528
           +GC +  VW  +VR+V F E    +     LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 450 DPAPVASASRPNP---TRPGPQSQSLFRSYGSNLPTSL 346
           +PA  ASAS PNP   TR G +      + GS+ P SL
Sbjct: 250 EPASKASASSPNPQSGTRLGTKESVAPNNEGSSNPPSL 287


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 624  RHDLRLG-RSAEGRRTRVRIQSET*DDFRECHIKYIQFLSRIILKY*LAKTNITHE 460
            + D +LG + A   + +V + S+  D  +E H+KY+Q   +  L+  LAK +I  E
Sbjct: 1053 KEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
 Frame = -2

Query: 437 SHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTGA 273
           SHP  ++ R+ P+   N Y+  +  +  L    +   L + +     +G ++ ++V +G+
Sbjct: 253 SHPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGS 312

Query: 272 T-SPRTSSPEFSRSAESIRTP 213
           T SP+ +  ++    +SI TP
Sbjct: 313 TVSPKYTIQQY---VQSIGTP 330


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = -1

Query: 477 TNITHEHRPDPAPVASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPA 298
           TNI  + +PD  PVA+  RP     G           S  P S  +I+L   G S   P 
Sbjct: 237 TNILEQLQPDSWPVANDRRPQRC-TGTALNISVSMMESVCPNSGGHIMLFAGGPSTVGPG 295

Query: 297 ADMGTNRRD 271
             + T  R+
Sbjct: 296 TVVSTELRE 304


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 471 ITHEHRPDPAPVASASRPNP-TRPGPQSQSLF 379
           ++H   P PAP  S S+P   ++P PQ  S F
Sbjct: 289 LSHSSVPSPAPPRSVSQPTYFSQPMPQFSSSF 320


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 281 TGATSPRTSSPEFSRSAESIRTPPQMRCSS--RSEPYLPSIGF 159
           + ++S  +SSP   RS+   +TPP     S   + P+ P +GF
Sbjct: 3   SSSSSSGSSSPASKRSSRKRQTPPMPELPSFLLAFPHAPPLGF 45


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -2

Query: 206 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 69
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 688 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFS 542
           SS+++ E  S      +  +KP+R TA K + + ++ GP+  R +  F+
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFA 383


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 352 FPYLHYSID*RLFTLETCCGYGYEPARHL 266
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,933
Number of Sequences: 5004
Number of extensions: 67230
Number of successful extensions: 236
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)