Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0025
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0479 + 17627605-17627839,17628965-17629107,17630018-176301... 34 0.094
05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980 33 0.22
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.67
06_01_0350 + 2534422-2535615 31 1.2
06_01_0368 + 2645007-2645317,2645422-2645509,2648927-2649183,264... 30 1.5
12_02_0407 - 18654134-18654172,18654913-18655803 30 2.0
08_02_0551 - 18535219-18536134,18536140-18536345 30 2.0
05_06_0098 + 25560158-25560925 30 2.0
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 30 2.0
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 2.7
01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305 29 2.7
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 29 3.5
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 4.7
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443... 29 4.7
11_05_0087 + 18970741-18972702 28 6.2
07_03_0078 - 13147741-13148913 28 6.2
05_04_0127 - 18262499-18263104 28 6.2
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 8.2
09_02_0369 - 8012470-8013120 28 8.2
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 8.2
05_01_0608 + 5429901-5429982,5430610-5431058,5436758-5437183,543... 28 8.2
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 28 8.2
03_05_0565 + 25667391-25667696 28 8.2
03_02_0816 + 11487811-11488708,11488835-11489235 28 8.2
03_02_0576 - 9587698-9588636 28 8.2
>08_02_0479 +
17627605-17627839,17628965-17629107,17630018-17630137,
17630497-17630721
Length = 240
Score = 34.3 bits (75), Expect = 0.094
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 459 HRPDPAPVASASRPNPTRPGPQSQSLFR 376
HRP P+P A+A+ P+P P ++ LFR
Sbjct: 18 HRPRPSPYAAAAAPSPDAAAPPAELLFR 45
>05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980
Length = 681
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 465 HEHRPDPAPVASASRPNPTRPGPQS 391
H HRPD APV A RP ++ GP S
Sbjct: 442 HFHRPDKAPVVDAIRPLGSQDGPMS 466
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -2
Query: 464 TNIDQTRH------RSHPLPVQTRHAPVLRANP 384
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 159 PWNSNAQAEKKTLPGPLGGVFRP 91
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>06_01_0368 +
2645007-2645317,2645422-2645509,2648927-2649183,
2649453-2649504,2649527-2649838
Length = 339
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -1
Query: 486 LAKTNITHEHRPDPA-PVASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 310
+A+ ++ + P P P +A P PT P P+ S+ SY + +L Y++L+ G+S
Sbjct: 187 VAQADVAPQRPPRPTGPRPAAHVPRPTPPSPRKVSVSGSY---VGLAL-YVVLAAAGTSS 242
Query: 309 WRPAAD 292
P D
Sbjct: 243 RGPPLD 248
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 16 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 180
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>08_02_0551 - 18535219-18536134,18536140-18536345
Length = 373
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -1
Query: 459 HRPDPAPVASASRPNPTRPGPQS 391
H PDP PVA A RP T P P S
Sbjct: 40 HHPDPLPVA-APRPTSTSPRPTS 61
>05_06_0098 + 25560158-25560925
Length = 255
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = -2
Query: 443 HRSHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 264
HR P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
Query: 263 RTSSP 249
P
Sbjct: 91 SQRPP 95
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -2
Query: 257 SSPEFSRSA--ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFG 84
S E SR++ + I+ P M S + + GFHG L+ KL PDL + HF
Sbjct: 175 SKQESSRASPMKLIKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFN 231
Query: 83 LPRRTLVFKDEGTI 42
LVF G I
Sbjct: 232 PATNQLVFPGRGAI 245
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 434 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 345
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305
Length = 196
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 432 SASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNR 277
SAS P+P +P P S SL R+ S +Y G W A + R
Sbjct: 15 SASLPSPAQPAPASLSL-RAVSPRARLSASYAAFPIGGIGAWAAATPASSGR 65
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 363 WIRNFGIRIGSEDRGVSGLDGKRMRPVPGLVDVRALCSF*RVSILI*CGSKTV 521
W R G R+G ++ G+ R VPG+V R L + +V ++ G KTV
Sbjct: 84 WERVVGHRVGGDEAA-----GEEEREVPGVVGCRMLAASGQVGCVLGKGGKTV 131
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 428 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 315
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>01_07_0257 -
42343493-42343528,42344215-42344271,42344272-42344316,
42344374-42344518,42344606-42344733,42344939-42345044,
42345113-42345189,42345264-42345361,42345945-42346058,
42346154-42346294,42346418-42346502,42346721-42346849
Length = 386
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 304 TCCGYGYEPARHLHVHPHLNFQGP 233
+CCG+ R+ + PHLN GP
Sbjct: 135 SCCGFEEVLERYRQIVPHLNLSGP 158
>11_05_0087 + 18970741-18972702
Length = 653
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 145 VRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEDVR 264
VR P P+ GR+G RE R + + + G+ VR
Sbjct: 56 VRAPRRPLHGRHGHHREHRRGADELEPAGSPRHHRGQSVR 95
>07_03_0078 - 13147741-13148913
Length = 390
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 570 SGPAFSGLPRIFLAVSRVGFVSCAI 644
SGP + G R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247
>05_04_0127 - 18262499-18263104
Length = 201
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -1
Query: 483 AKTNITHEHRPDPAPVASASRPNPTRPGPQSQSLFRSYGSN 361
A N+ RP A+A++P P +++ +FR + +N
Sbjct: 26 AAMNVDWSPRPSDLAAAAAAKPRPPAAEDETERVFRKFDAN 66
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -3
Query: 466 ARTSTRPGTGRIRFPSKPDTPRSSE 392
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>09_02_0369 - 8012470-8013120
Length = 216
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 462 EHRPDPAPVASASRPNPTRP 403
+H P PAP A+A++P P P
Sbjct: 25 QHEPPPAPHAAATKPPPPPP 44
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 454 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 368
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>05_01_0608 +
5429901-5429982,5430610-5431058,5436758-5437183,
5437270-5437643,5437655-5438113,5438191-5438361,
5438442-5438760
Length = 759
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = -1
Query: 480 KTNITHEHRPDPAPVASASRPNPTRPGPQSQSL 382
K NI P PAP +SRP PTRP P SL
Sbjct: 401 KHNIEINITPRPAP---SSRPLPTRPHPTVVSL 430
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -2
Query: 320 ALHLGDLLRIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEP 180
A H G I VRT + TS A SI TP + CS+ + P
Sbjct: 38 ARHTGPRSHIAVRTCHVNDETSRSTCRNGATSIATPSVVACSALALP 84
>03_05_0565 + 25667391-25667696
Length = 101
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 296 RIWVRTGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGT 150
RI++ A PR SP +R A++ S+ +EP P HGT
Sbjct: 40 RIFMADAAHPPRHRSPPLARRADAASPRRSCSGSASAEPQAPVEEPHGT 88
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 462 EHRPDPAPVASASRPNPTRPGP 397
E P+P A+ RP PTRP P
Sbjct: 137 EESAPPSPAATTPRPLPTRPPP 158
>03_02_0576 - 9587698-9588636
Length = 312
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 456 RPDPAPVASASRPNPTRPGPQSQS 385
RP PAP A+A+RP P P +S
Sbjct: 231 RPPPAPAAAAARPPPPPAFPTRRS 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,542,578
Number of Sequences: 37544
Number of extensions: 515035
Number of successful extensions: 2332
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2322
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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