Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0025
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr... 32 0.34
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p... 32 0.34
Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z83731-7|CAH10800.1| 1046|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81505-3|CAH10793.1| 1046|Caenorhabditis elegans Hypothetical pr... 31 1.0
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 29 2.4
U41014-4|AAK32946.3| 557|Caenorhabditis elegans Hypothetical pr... 29 3.2
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 4.2
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 4.2
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 4.2
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 4.2
Z81527-14|CAB04278.2| 506|Caenorhabditis elegans Hypothetical p... 28 7.4
Z79753-8|CAB02089.2| 506|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical... 28 7.4
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 9.8
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 27 9.8
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 9.8
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 9.8
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL034393-10|CAA22323.1| 228|Caenorhabditis elegans Hypothetical... 27 9.8
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -1
Query: 438 VASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTNR 277
V A P P+ P P ++ +S NLP S+ + R G SP W P A TNR
Sbjct: 405 VVQAPPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461
>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -1
Query: 438 VASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTNR 277
V A P P+ P P ++ +S NLP S+ + R G SP W P A TNR
Sbjct: 405 VVQAPPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461
>Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical
protein F16A11.3b protein.
Length = 1364
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 269 SPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 162
SPR S F + I T P+ + +S SEP P+ G
Sbjct: 702 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 737
>Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical
protein F16A11.3a protein.
Length = 1490
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 269 SPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 162
SPR S F + I T P+ + +S SEP P+ G
Sbjct: 828 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 863
>Z83731-7|CAH10800.1| 1046|Caenorhabditis elegans Hypothetical
protein F16A11.3c protein.
Length = 1046
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 269 SPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 162
SPR S F + I T P+ + +S SEP P+ G
Sbjct: 828 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 863
>Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical
protein F16A11.3b protein.
Length = 1364
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 269 SPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 162
SPR S F + I T P+ + +S SEP P+ G
Sbjct: 702 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 737
>Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical
protein F16A11.3a protein.
Length = 1490
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 269 SPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 162
SPR S F + I T P+ + +S SEP P+ G
Sbjct: 828 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 863
>Z81505-3|CAH10793.1| 1046|Caenorhabditis elegans Hypothetical
protein F16A11.3c protein.
Length = 1046
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 269 SPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG 162
SPR S F + I T P+ + +S SEP P+ G
Sbjct: 828 SPRARSVSFGTNGSPISTSPRRKANSTSEPSPPNTG 863
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 468 THEHRPDPAPVASASRPNPTRPGPQSQS 385
+HEH P PAP A S P P + QS S
Sbjct: 330 SHEHSPSPAP-APVSSPTPVQQYQQSYS 356
>U41014-4|AAK32946.3| 557|Caenorhabditis elegans Hypothetical
protein C06G1.5 protein.
Length = 557
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 462 EHRPDPAPVASASRPNPTRPGPQSQSLFRSYGSNLP 355
++RP P P SRP P +P + ++ G +P
Sbjct: 114 QYRPTPKPTQVISRPLPPKPQAPKEPIYYPQGKPVP 149
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 490 LTR*NEHNARTSTRPGTGRIRFPSKPDT 407
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 490 LTR*NEHNARTSTRPGTGRIRFPSKPDT 407
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 490 LTR*NEHNARTSTRPGTGRIRFPSKPDT 407
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 490 LTR*NEHNARTSTRPGTGRIRFPSKPDT 407
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>Z81527-14|CAB04278.2| 506|Caenorhabditis elegans Hypothetical
protein F35E12.8 protein.
Length = 506
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = -1
Query: 402 GPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDISTYILT*IFKVRR 229
GP+ S N T S SS W P A G N +ST ++T F +++
Sbjct: 339 GPELSLTLSSTADNWLTPYNGRKGSIFSSSLWTPEATSGYNHTFVSTNVMTFTFNIKK 396
>Z79753-8|CAB02089.2| 506|Caenorhabditis elegans Hypothetical
protein F35E12.8 protein.
Length = 506
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = -1
Query: 402 GPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDISTYILT*IFKVRR 229
GP+ S N T S SS W P A G N +ST ++T F +++
Sbjct: 339 GPELSLTLSSTADNWLTPYNGRKGSIFSSSLWTPEATSGYNHTFVSTNVMTFTFNIKK 396
>AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical
protein C31B8.1 protein.
Length = 229
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 417 NPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 310
+P + P +Q LF S+G LP I + SSP
Sbjct: 19 SPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSP 54
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -1
Query: 240 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 112
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 27.5 bits (58), Expect = 9.8
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = -2
Query: 281 TGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG-FHGTRTLRQKRKLFPDLSA 105
+ +T P +SSP+ S + + T + S+ PS+ T T + + P+ S
Sbjct: 379 SSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGST 438
Query: 104 ASSGHFGLPRRTLVFKDEGTIIETVPLPGSGIGT 3
ASS G T E T TVP GS +GT
Sbjct: 439 ASS-PTGSTGSTFSVATEVTSQSTVP-SGSSLGT 470
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.5 bits (58), Expect = 9.8
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = -2
Query: 281 TGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG-FHGTRTLRQKRKLFPDLSA 105
+ +T P +SSP+ S + + T + S+ PS+ T T + + P+ S
Sbjct: 586 SSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGST 645
Query: 104 ASSGHFGLPRRTLVFKDEGTIIETVPLPGSGIGT 3
ASS G T E T TVP GS +GT
Sbjct: 646 ASS-PTGSTGSTFSVATEVTSQSTVP-SGSSLGT 677
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 27.5 bits (58), Expect = 9.8
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = -2
Query: 281 TGATSPRTSSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG-FHGTRTLRQKRKLFPDLSA 105
+ +T P +SSP+ S + + T + S+ PS+ T T + + P+ S
Sbjct: 586 SSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGST 645
Query: 104 ASSGHFGLPRRTLVFKDEGTIIETVPLPGSGIGT 3
ASS G T E T TVP GS +GT
Sbjct: 646 ASS-PTGSTGSTFSVATEVTSQSTVP-SGSSLGT 677
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 224 IRTPPQMRCSSRSEPYLPSIGFHGT 150
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
>AL034393-10|CAA22323.1| 228|Caenorhabditis elegans Hypothetical
protein Y18D10A.12 protein.
Length = 228
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -1
Query: 465 HEHRPDPAPVASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSS 313
H RP +P RP P +P P+ +S + SY TS + ++ S
Sbjct: 44 HHGRPPHSP--RPPRPQPVQPRPECESGWTSYNRPQGTSCIKVFYASTSQS 92
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -2
Query: 200 CSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVP 27
C++ P+L I T+ +RQ + P+L +A H + FK E T+P
Sbjct: 80 CTTNFTPFLRPITVPVTKGVRQGDPISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIP 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,276,056
Number of Sequences: 27780
Number of extensions: 395561
Number of successful extensions: 1548
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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