Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0024
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76965.1 68414.m08961 glycine-rich protein                          30   1.5  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   4.5  
At5g42370.1 68418.m05159 expressed protein                             29   4.5  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    29   4.5  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    29   4.5  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    29   4.5  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   5.9  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   5.9  

>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 458 PGTGXIRFPSKPDTPRSSEPILIPKLRIQFAD 363
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 245 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 111
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 184 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 74
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 47  SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 178
           S++   SL TS  +  PK P+++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 467 STRPGTGXIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 348
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 467 STRPGTGXIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 348
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 589 RVRIQSET*DDFRECHIKYIQFLRPH 512
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 240 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 142
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,593,649
Number of Sequences: 28952
Number of extensions: 383024
Number of successful extensions: 1107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)