Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0021
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   6.0  
U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein (sp...    27   8.0  
AL032649-4|CAA21703.2|  511|Caenorhabditis elegans Hypothetical ...    27   8.0  
AL032649-3|CAA21702.2|  502|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical
           protein F19B6.4 protein.
          Length = 695

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -1

Query: 419 TDVPPQSNSPP-GSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTASANRVS 243
           T +P   N  P  S +E     + +  ERFR   TL   N+T  AR   + +T +   V 
Sbjct: 42  TPIPVLINDTPVASEIEQVEKELAHSSERFRKPKTLSVTNDTESARIPSQVKTNAKKLVF 101

Query: 242 NETMKVVVFQRRSRETI 192
                VV+ ++  R+ I
Sbjct: 102 QNIQAVVLKKKGVRQEI 118


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 217  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 98
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 217  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 98
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -2

Query: 214 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 98
           +DD   R P + +     L  PY +   SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724


>U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform d protein.
          Length = 208

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 23/76 (30%), Positives = 33/76 (43%)
 Frame = -3

Query: 378 PRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHRFRQPSK**NNESSGFSATIAR 199
           PR  SR S +RR   PPR  S   +R   R     ++ R R P +     S   S +  +
Sbjct: 87  PRRRSR-SPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPS-PK 144

Query: 198 NDLPLMLHLSCLLTMP 151
            DL L  ++S   + P
Sbjct: 145 RDLQLRANISVSYSSP 160


>AL032649-4|CAA21703.2|  511|Caenorhabditis elegans Hypothetical
           protein Y55D9A.2b protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -1

Query: 404 QSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTASANRVSNETMKV 225
           QS  PPG VL P++      ++ + H    H     P   ++YRP   +  +++ E  + 
Sbjct: 17  QSRIPPGYVLYPNY------EQYWSHE---HGMFYNPDTEQFYRPEDKTVYQLNAEGSEY 67

Query: 224 VVFQRR 207
           V+ +RR
Sbjct: 68  VLVERR 73


>AL032649-3|CAA21702.2|  502|Caenorhabditis elegans Hypothetical
           protein Y55D9A.2a protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -1

Query: 404 QSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTASANRVSNETMKV 225
           QS  PPG VL P++      ++ + H    H     P   ++YRP   +  +++ E  + 
Sbjct: 17  QSRIPPGYVLYPNY------EQYWSHE---HGMFYNPDTEQFYRPEDKTVYQLNAEGSEY 67

Query: 224 VVFQRR 207
           V+ +RR
Sbjct: 68  VLVERR 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,360,011
Number of Sequences: 27780
Number of extensions: 313414
Number of successful extensions: 920
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)