Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0020
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 70 2e-13
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 48 8e-07
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 31 0.096
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz... 28 0.90
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 27 1.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.1
SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc... 26 3.6
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 3.6
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 26 3.6
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo... 25 8.4
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 8.4
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.4
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 8.4
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 25 8.4
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 69.7 bits (163), Expect = 2e-13
Identities = 37/73 (50%), Positives = 47/73 (64%)
Frame = -1
Query: 241 DAEQKGILKPGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTLVALGAE 62
DAE+KG L G IVE T+GNTGIGLA A RGY+C+I +P S K++TL LGAE
Sbjct: 64 DAEKKGKLSRG-GTIVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAE 122
Query: 61 IIRTPTEAAWDSP 23
+ P A + +P
Sbjct: 123 VHPVPV-APFSNP 134
Score = 50.4 bits (115), Expect = 1e-07
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = -2
Query: 393 SDILXVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIA 256
S + IG TPL++L+ L + G C + AK EF NPGGSVKDR A
Sbjct: 15 SGFIGAIGRTPLIRLNTLSNETG--CNILAKAEFQNPGGSVKDRAA 58
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 48.0 bits (109), Expect = 8e-07
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Frame = -2
Query: 492 DAKNGTSNSARKFFTLKDMPHIVRALDRNQKVHSDILX----VIGNTPLVKLSKLPKDEG 325
D +G + A + L+ + +R + DI+ +IGNT +V++ L + G
Sbjct: 7 DLASGIAMGAVFMYLLRRLYESLRVKSSADSLEEDIVNGVEGLIGNTKMVRIKSLSQATG 66
Query: 324 LKCEMYAKCEFLNPGGSVKDRIA 256
C++ AK EFLNPG S KDR+A
Sbjct: 67 --CDILAKAEFLNPGNSPKDRVA 87
Score = 46.0 bits (104), Expect = 3e-06
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = -1
Query: 259 SFRMFLDAEQKGILKPGKS-VIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNT 83
+ +M AE+ G L P +S + E T+G+TGI +A+ GY I +P S EK +
Sbjct: 87 ALQMIRTAEENGDLVPYQSNAVYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDI 146
Query: 82 LVALGAEIIR-TP 47
L LGA + R TP
Sbjct: 147 LELLGAHVQRVTP 159
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 31.1 bits (67), Expect = 0.096
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -1
Query: 208 KSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTLVALGAEII 56
K+ ++ ++GN G+A +A G + IV+P+ + K + LGA ++
Sbjct: 161 KNGVIACSAGNHAQGVAYSARTLGVKATIVMPQNTPEIKWRNVKRLGANVL 211
>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 0.90
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 372 GNTPLVKLSKLPKDEGLKCEMYAKCEFLNPG 280
G TP+ + +L K G K E++AK E N G
Sbjct: 14 GPTPITSMKRLSKTLGGKVEIFAKREDCNSG 44
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -1
Query: 208 KSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTLVALGAEII 56
K+ ++ +SGN +AL+A + G I++P + KV G ++I
Sbjct: 74 KAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVI 124
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 2.1
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 3 HAIMLLSGESQAASVGVRIISAPNATSVFTFSSDIFSGNTIMHLYPLTAAASASPIPVLP 182
H + + +S S+ + S NA ++ D+ L + AAAS SP+P LP
Sbjct: 402 HVFIEFNSDSGITSLHLHASSNTNADNIIRALGDVAGSARAAGLREI-AAASGSPMPKLP 460
>SPAC23A1.03 |apt1||adenine phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 3.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 238 AEQKGILKPGKSVIVEPTSGNTGIGLALAA 149
A QKG +KPG+ V++ TG G ALAA
Sbjct: 110 AIQKGTIKPGQRVLIVDDILATG-GTALAA 138
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 3.6
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +3
Query: 36 AASVGVRIISAPNATSVFTFSSDIFSGNTIMHLYPLTAAASASPIPVLPDVGSTMTDLPG 215
AA+ ++ P +T FS + + + AA S P+P +P VG+T T +P
Sbjct: 195 AAAKKNKVAVTPQSTLPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGAT-TAVPP 253
Query: 216 FKIP 227
IP
Sbjct: 254 LSIP 257
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = -2
Query: 477 TSNSARKFFTLKDMPHIVRALDRNQKVHSDILXVIGNTPLVKLSKLPKDE 328
T+ +++K L + H V + + + + D+L L+KL LP+D+
Sbjct: 88 TTKTSQKLVLLPEN-HAVNSFNEEESNYEDLLTPSDAYNLIKLENLPRDK 136
>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
Srk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 580
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 242 QKHAEAMRSLTDPPGLRNSHFAYISHFNPS 331
Q+ A++ ++ T P R++HF H NPS
Sbjct: 49 QQVADSTQNPTSKPKSRHAHFHETVHENPS 78
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 100 DEKVNTLVALGAEIIRTPTEAAWDSPESNIIA 5
+ V++ AL ++++R P E + ESNIIA
Sbjct: 1015 ESAVDSNEALFSKVLRRPIEKETGADESNIIA 1046
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 215 LQNTLLFCIQKHAEAMRSLTDPP 283
L N + FC++K EA + PP
Sbjct: 928 LDNWIQFCLEKDGEAPKEAPPPP 950
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 406 SEGTFRYFXCNRKYTTGEVIQIT*R*RIEM 317
S+GTF +RK TTGE+ I +++M
Sbjct: 571 SKGTFGTVYLSRKNTTGEIYAIKVLRKVDM 600
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 188 GFYYD*LARLQNTLLFCIQKHA 253
GFYY AR+QN F +KH+
Sbjct: 12 GFYYKQNARMQNRPRFSDRKHS 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,641
Number of Sequences: 5004
Number of extensions: 50289
Number of successful extensions: 138
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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