Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0020
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 4e-29
SB_32365| Best HMM Match : PALP (HMM E-Value=0.064) 100 8e-22
SB_18116| Best HMM Match : PALP (HMM E-Value=0) 100 8e-22
SB_44496| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_30356| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.099
SB_32670| Best HMM Match : CIMR (HMM E-Value=0) 31 0.53
SB_45316| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_13869| Best HMM Match : Antirestrict (HMM E-Value=4.5) 30 1.2
SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05) 29 1.6
SB_54464| Best HMM Match : DUF1566 (HMM E-Value=4.5) 29 2.1
SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05) 29 2.8
SB_7324| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_46583| Best HMM Match : Hus1 (HMM E-Value=0) 28 3.7
SB_50561| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_21002| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_4621| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_29397| Best HMM Match : fn3 (HMM E-Value=0.038) 28 4.9
SB_53121| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_8320| Best HMM Match : p450 (HMM E-Value=0) 28 4.9
SB_2273| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_45424| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0) 27 6.5
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0) 27 6.5
SB_6942| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_46672| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_21340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_12831| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_51123| Best HMM Match : PDZ (HMM E-Value=3.8e-18) 27 8.6
SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_40804| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_29646| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_27934| Best HMM Match : Complex1_30kDa (HMM E-Value=1.2) 27 8.6
SB_23505| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_50456| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_46356| Best HMM Match : Adeno_VII (HMM E-Value=8) 27 8.6
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 27 8.6
>SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 124 bits (299), Expect = 4e-29
Identities = 61/81 (75%), Positives = 73/81 (90%)
Frame = -1
Query: 253 RMFLDAEQKGILKPGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTLVA 74
RM +AE++G LKPG ++I EPTSGNTGIGLALAAAV+GYRCIIV+PEKMS+EKV+ L A
Sbjct: 49 RMIEEAEREGRLKPGDTLI-EPTSGNTGIGLALAAAVKGYRCIIVMPEKMSNEKVDVLRA 107
Query: 73 LGAEIIRTPTEAAWDSPESNI 11
LGAEI+RTPTEA +DSPES+I
Sbjct: 108 LGAEIVRTPTEAKFDSPESHI 128
Score = 63.7 bits (148), Expect = 8e-11
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = -2
Query: 390 DILXVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRI 259
+IL IG+TPLV+++ + K GLKCE+ AKCEF N GGSVKDRI
Sbjct: 3 NILQKIGDTPLVRINNIGKTYGLKCELLAKCEFFNAGGSVKDRI 46
>SB_32365| Best HMM Match : PALP (HMM E-Value=0.064)
Length = 129
Score = 100 bits (239), Expect = 8e-22
Identities = 49/81 (60%), Positives = 61/81 (75%)
Frame = -1
Query: 253 RMFLDAEQKGILKPGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTLVA 74
RM DAE+ +KPG ++I EPTSGNTGI LALA+AV+GYRC+IV+ EKMS +K +T A
Sbjct: 32 RMIEDAERDNHIKPGDTLI-EPTSGNTGIALALASAVKGYRCVIVMSEKMSSDKADTQKA 90
Query: 73 LGAEIIRTPTEAAWDSPESNI 11
LG +R P EA +DSPES I
Sbjct: 91 LGGICVRAPAEAKFDSPESTI 111
Score = 44.8 bits (101), Expect = 4e-05
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = -2
Query: 327 GLKCEMYAKCEFLNPGGSVKDRI 259
GLKCE+ AKCEF+NP GS+KDRI
Sbjct: 7 GLKCEVVAKCEFMNPVGSLKDRI 29
>SB_18116| Best HMM Match : PALP (HMM E-Value=0)
Length = 470
Score = 100 bits (239), Expect = 8e-22
Identities = 49/81 (60%), Positives = 61/81 (75%)
Frame = -1
Query: 253 RMFLDAEQKGILKPGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTLVA 74
RM DAE+ +KPG ++I EPTSGNTGI LALA+AV+GYRC+IV+ EKMS +K +T A
Sbjct: 32 RMIEDAERDNHIKPGDTLI-EPTSGNTGIALALASAVKGYRCVIVMSEKMSSDKADTQKA 90
Query: 73 LGAEIIRTPTEAAWDSPESNI 11
LG +R P EA +DSPES I
Sbjct: 91 LGGICVRAPAEAKFDSPESTI 111
Score = 44.8 bits (101), Expect = 4e-05
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = -2
Query: 327 GLKCEMYAKCEFLNPGGSVKDRI 259
GLKCE+ AKCEF+NP GS+KDRI
Sbjct: 7 GLKCEVVAKCEFMNPVGSLKDRI 29
>SB_44496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 27
Score = 51.6 bits (118), Expect = 3e-07
Identities = 23/26 (88%), Positives = 26/26 (100%)
Frame = -1
Query: 169 IGLALAAAVRGYRCIIVLPEKMSDEK 92
IGLALAAAV+GYRCIIV+PEKMS+EK
Sbjct: 2 IGLALAAAVKGYRCIIVMPEKMSNEK 27
>SB_30356| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 33.5 bits (73), Expect = 0.099
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 60 ISAPNATSVFTFSSDIFSGNTIMHLYPLTAAASASPIPVLPDVGS-TMTDLPGFKI 224
+ P A S F +DI G T + L + + P P+LPD+ S TM ++P ++
Sbjct: 117 LPVPPAESNFLTRADIAQGGTAVPLTQPGSTQTPEPAPILPDLPSTTMQEVPAVEV 172
>SB_32670| Best HMM Match : CIMR (HMM E-Value=0)
Length = 1441
Score = 31.1 bits (67), Expect = 0.53
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 481 WHIELCEKILYTKGHASHCKGTGSKSEGT 395
+HI +C +I T GH HC + GT
Sbjct: 196 FHINICREITPTTGHTQHCPAGSAACNGT 224
>SB_45316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 31.1 bits (67), Expect = 0.53
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 387 ILXVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIASACFWMQ 235
+ V+G P L+ + ++EG + E + EFL PGGS R A+ +Q
Sbjct: 10 LFTVVGKAPAEPLAPITEEEG-RSE-HKIIEFLQPGGSTSSRAAATAVELQ 58
>SB_13869| Best HMM Match : Antirestrict (HMM E-Value=4.5)
Length = 149
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 336 KDEGLKCEMYAKCEFLNPGGSVKDRIASACFWMQ 235
K G K +YA+ EFL PGGS R A+ +Q
Sbjct: 15 KSNGGKA-IYARIEFLQPGGSTSSRAAATAVELQ 47
>SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05)
Length = 407
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 199 IVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTLVALGAEII 56
+V +SGN L+LAA + + IV+P+ K ++ GA I+
Sbjct: 173 VVTHSSGNHAQALSLAAKLMNLKAHIVMPKNAPHVKKAAVIEYGANIV 220
>SB_54464| Best HMM Match : DUF1566 (HMM E-Value=4.5)
Length = 174
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 324 LKCEMYAKCEFLNPGGSVKDRIASACFWMQ 235
+KC ++ EFL PGGS R A+ +Q
Sbjct: 43 VKCLLFRFIEFLQPGGSTSSRAAATAVELQ 72
>SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)
Length = 226
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -1
Query: 220 LKPGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVL--PEKMSDEKVNTLVALG 68
++ K V+V +G TG+ + A RG+ ++ PEKM+ + N +V G
Sbjct: 4 VQASKKVVVFGGTGKTGLHVVQQALDRGHHVTVIARSPEKMTIKNDNLVVVKG 56
>SB_7324| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -2
Query: 417 LDRNQKVHSDILXVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIASACFWM 238
+D K+ + L I T LVK ++ + K +Y EFL PGGS R A+ +
Sbjct: 25 VDGIDKLDAVFLTAIWET-LVKNAETAANTS-KSSLYLGIEFLQPGGSASSRAAATAVEL 82
Query: 237 Q 235
Q
Sbjct: 83 Q 83
>SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)
Length = 646
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -1
Query: 172 GIGLALAAAVRGYRCIIVLPEKMSDEKVNTLVA 74
G G LAA +R ++ L EK+SDE+V TL A
Sbjct: 602 GTGTVLAAELRSV--LMSLGEKLSDEEVTTLFA 632
>SB_50561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 312 MYAKCEFLNPGGSVKDRIASACFWMQ 235
MY EFL PGGS R A+ +Q
Sbjct: 1 MYVMIEFLQPGGSTSSRAAATAVELQ 26
>SB_21002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 318 CEMYAKCEFLNPGGSVKDRIASACFWMQ 235
CE + EFL PGGS R A+ +Q
Sbjct: 6 CEAAIQIEFLQPGGSTSSRAAATAVELQ 33
>SB_4621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -2
Query: 375 IGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIASACFWMQ 235
I N V L KL ++ CE+Y EFL PGGS R A+ +Q
Sbjct: 31 IENQKKVYLHKLLLNKKY-CELYI--EFLQPGGSTSSRAAATAVELQ 74
>SB_29397| Best HMM Match : fn3 (HMM E-Value=0.038)
Length = 163
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 345 KLPKDEGLKCEM-YAKCEFLNPGGSVKDRIASACFWMQ 235
K P ++G + ++ Y EFL PGGS R A+ +Q
Sbjct: 24 KPPLEDGGRSDLTYIIIEFLQPGGSTSSRAAATAVELQ 61
>SB_53121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 339 PKDEGLKCEMYAKCEFLNPGGSVKDRIASACFWMQ 235
PK C + EFL PGGS R A+ +Q
Sbjct: 52 PKSTPRNCGNGQRIEFLQPGGSTSSRAAATAVELQ 86
>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
Length = 1207
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -1
Query: 244 LDAEQKGILKPGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKV 89
L E +LKPG+ + V S + + +R Y I VLP +M + +
Sbjct: 1039 LHHEVSTVLKPGEPITVNTLSSLPYLKAWIKETLRMYPIIAVLPRRMEQDLI 1090
>SB_2273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 312 MYAKCEFLNPGGSVKDRIASACFWMQ 235
+Y + EFL PGGS R A+ +Q
Sbjct: 14 LYLRIEFLQPGGSTSSRAAATAVELQ 39
>SB_45424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 312 MYAKCEFLNPGGSVKDRIASACFWMQ 235
++ K EFL PGGS R A+ +Q
Sbjct: 90 VFGKIEFLQPGGSTSSRAAATAVELQ 115
>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
Length = 1498
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 69 PNATSVFTFSSDIFSGNTIMHLYPLTAAASASPIPVLPDVGSTMTDLPG 215
PN + FTFS +F+ I H L A +S + + VG LPG
Sbjct: 658 PNISLKFTFSLIVFTVVLISHRGQLIAGSSGGNLRLWSVVGVAEMRLPG 706
>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1433
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 184 SGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTLVALGAEI-IRTPTEAA 35
SGN + + + + GY IIV+ K +D N L +G I + TPTE A
Sbjct: 413 SGNVAVLATIVSILTGYLVIIVIVRK-ADR--NDLRKIGDPISVNTPTETA 460
>SB_6942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 321 KCEMYAKCEFLNPGGSVKDRIASACFWMQ 235
+C + EFL PGGS R A+ +Q
Sbjct: 25 QCALSVNIEFLQPGGSTSSRAAATAVELQ 53
>SB_46672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 321 KCEMYAKCEFLNPGGSVKDRIASACFWMQ 235
+C A EFL PGGS R A+ +Q
Sbjct: 36 RCVQRAGIEFLQPGGSTSSRAAATAVELQ 64
>SB_21340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 306 AKCEFLNPGGSVKDRIASACFWMQ 235
AK EFL PGGS R A+ +Q
Sbjct: 52 AKIEFLQPGGSTSSRAAATAVELQ 75
>SB_12831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 306 AKCEFLNPGGSVKDRIASACFWMQ 235
AK EFL PGGS R A+ +Q
Sbjct: 28 AKIEFLQPGGSTSSRAAATAVELQ 51
>SB_51123| Best HMM Match : PDZ (HMM E-Value=3.8e-18)
Length = 182
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 214 PGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSD 98
PG+ ++E G+TG+GL++ IV+ E D
Sbjct: 24 PGQECLIEIPKGSTGLGLSIVGGADTLLGTIVIHEVYED 62
>SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 27.1 bits (57), Expect = 8.6
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 211 GKSVIVEPTSGNTGIG--LALAAAVRGYRCIIVLPEKMSDEK 92
GK+VIV T N+GIG AL A RG R I+ + S EK
Sbjct: 68 GKTVIV--TGANSGIGKATALELARRGARVIMACRDLESAEK 107
>SB_40804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 396 VPSDFDPVPLQCEACPLV*RIFSQSSMCHF*HPH 497
+P ++ P+ L C +C L+ I S+ M H H
Sbjct: 679 IPGNYRPISLTCISCKLLEHIVSKHIMDHLSRHH 712
>SB_29646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 309 YAKCEFLNPGGSVKDRIASACFWMQ 235
+ K EFL PGGS R A+ +Q
Sbjct: 27 FCKIEFLQPGGSTSSRAAATAVELQ 51
>SB_27934| Best HMM Match : Complex1_30kDa (HMM E-Value=1.2)
Length = 385
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 401 RYIQIFXM*SEIHHW*SYPNYLKMKD*NVK 312
RY Q+F + S HHW + N+++ D NV+
Sbjct: 188 RY-QLFRLESGFHHWVQHVNFIQYFDLNVE 216
>SB_23505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 330 EGLKCEM-YAKCEFLNPGGSVKDRIASACFWMQ 235
EG K + + K EFL PGGS R A+ +Q
Sbjct: 15 EGKKLKYTWQKIEFLQPGGSTSSRAAATAVELQ 47
>SB_50456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 324 LKCEMYAKCEFLNPGGSVKDRIASACFWMQ 235
L+ +M EFL PGGS R A+ +Q
Sbjct: 37 LRFQMKTDIEFLQPGGSTSSRAAATAVELQ 66
>SB_46356| Best HMM Match : Adeno_VII (HMM E-Value=8)
Length = 141
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 333 DEGLKCEMYAK-CEFLNPGGSVKDRIASACFWMQ 235
D G K +A+ EFL PGGS R A+ +Q
Sbjct: 6 DGGTKVTAWARRIEFLQPGGSTSSRAAATAVELQ 39
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 378 VIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIASACFWMQ 235
V N P+ + S + +++ E EFL PGGS R A+ +Q
Sbjct: 287 VHANIPVFERSFIDRNKERIPEDQLSIEFLQPGGSTSSRAAATAVELQ 334
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,680,884
Number of Sequences: 59808
Number of extensions: 391204
Number of successful extensions: 1600
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -