Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0020
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...   134   4e-34
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.44 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score =  134 bits (325), Expect = 4e-34
 Identities = 62/83 (74%), Positives = 75/83 (90%)
 Frame = -1

Query: 259 SFRMFLDAEQKGILKPGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTL 80
           ++RM  DAE KG+LKPG   I+EPTSGNTGIGLA+AAAVRGY+CIIV+PEKMSDEK++TL
Sbjct: 82  AYRMIQDAEDKGLLKPG-CTIIEPTSGNTGIGLAMAAAVRGYKCIIVMPEKMSDEKISTL 140

Query: 79  VALGAEIIRTPTEAAWDSPESNI 11
            ALGA+IIRTPTEA+W SPE++I
Sbjct: 141 YALGAKIIRTPTEASWHSPEAHI 163



 Score = 83.8 bits (198), Expect = 9e-19
 Identities = 38/61 (62%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
 Frame = -2

Query: 435 PHIVRALDRNQ-KVHSDILXVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRI 259
           PH  R  + +  K+  DIL  IG TPL+KL+ +PK  G+KCE+YAKCEFLNPGGSVKDRI
Sbjct: 22  PHTCRTKNGDYTKIMPDILTAIGQTPLIKLNNIPKSYGIKCEIYAKCEFLNPGGSVKDRI 81

Query: 258 A 256
           A
Sbjct: 82  A 82


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 39  ASVGVRIISAPNATSVFTFSS-DIFSGNTIMHLYPLTAAASASPIPVLPDVGSTMTDLPG 215
           +S GV ++    A+ V   +S  +    T  HL   +  A+A+P P    VGS +    G
Sbjct: 9   SSAGVGVVGGTIASVVAGAASLTLVKAETPEHLAGTSTTAAATPTPPSVPVGSAVAGTAG 68


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 232 QKGILKPGKSVIVEPTSGNTGI 167
           + GILKPG  V   P +  T +
Sbjct: 268 ETGILKPGMLVTFAPAALTTEV 289


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 45  VGVRIISAPNATSVFTFSSDIFSGNTIMH 131
           + VR+ +      V T   DI   NT++H
Sbjct: 113 IRVRVDACDRLWGVDTGVDDILGNNTVIH 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,839
Number of Sequences: 438
Number of extensions: 3435
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)