Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0016
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    28   1.5  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   3.5  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   4.7  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   6.1  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.1  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   6.1  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   8.1  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   8.1  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   8.1  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 439 SGCVRCRVWSMFVRYVRFSELVFYIMRPQKLYIF 540
           +GC +  VW  +VR+V F E          LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 166 PWNPIEGRYGSEREEHRICGGVRILSADLEIQVRDVRGDVAP 291
           P+ P+EG Y + ++ HRI    R   A LE ++R V+    P
Sbjct: 3   PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 623 ARKIRGRPENAGPDPVRNVRR 561
           AR I GRPEN G   ++N+ R
Sbjct: 214 ARTIPGRPENGGNCDIKNLSR 234


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -2

Query: 279 STYIPHLNFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQA 148
           STY P L   V     D   N     F  I+P+Y   WN  A A
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 218 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 81
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
 Frame = -3

Query: 449 THPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTGA 285
           +HP  ++ R+ P+   N Y+  +  +  L    +   L + +     +G ++ ++V +G+
Sbjct: 253 SHPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGS 312

Query: 284 T-SPRTSLT*ISRSAESIRTP 225
           T SP+ +   I +  +SI TP
Sbjct: 313 TVSPKYT---IQQYVQSIGTP 330


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 364 FPYLHYSID*RLFTLETCCGYGYEPARHL 278
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 265 SPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 104
           +P  + P  VSGH      LR+   IS    SM +ERS       R ++  + +
Sbjct: 611 TPLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 701 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRF 558
           SS+++ E  S      +  +KP+R TA K + + ++ GP+  R +  F
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSF 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,917
Number of Sequences: 5004
Number of extensions: 67363
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)