Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0016
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    29   4.4  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    29   4.4  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    29   4.4  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    29   4.4  
AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical...    28   7.6  

>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 502 LTR*NEHNARTSTRPGTGRIRFPSKPDT 419
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 502 LTR*NEHNARTSTRPGTGRIRFPSKPDT 419
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 502 LTR*NEHNARTSTRPGTGRIRFPSKPDT 419
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 502 LTR*NEHNARTSTRPGTGRIRFPSKPDT 419
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical
           protein C31B8.1 protein.
          Length = 229

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 429 NPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 322
           +P +  P +Q LF S+G  LP      I +   SSP
Sbjct: 19  SPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSP 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,586,873
Number of Sequences: 27780
Number of extensions: 393962
Number of successful extensions: 1255
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)