Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0014
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    27   1.9  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   7.6  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   7.6  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   7.6  

>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 532 KKYEFLINEQKRNEIVCIIQVTLSGYR 452
           K Y F   E++++ ++CI  +TL GY+
Sbjct: 337 KGYGFACFEEEKSALICISAMTLCGYQ 363


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 220 N*FHYWFHKNNSSKCNFLSVIMFSSLVLFNLI 125
           N  HY+  +  +S  NF+  I FS L L  ++
Sbjct: 112 NGLHYYAERERNSTSNFVDRIEFSDLELATIL 143


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +3

Query: 363 ICLTLVSKFAQLLETYENIIIILDELHTLSRYPDRVTCIIHTISFR 500
           +CL  +  F   +     +IIILDELH L+ +P  ++ II  IS R
Sbjct: 511 VCLLEILSFTSRVRP---VIIILDELH-LADHPS-LSLIIGMISHR 551


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +3

Query: 378 VSKFAQLLETYENIIIILDELHTLSRYPDRVTCIIHTISFRFCSFIKNSYFLVSNFY 548
           ++  ++ L+TY+NI++++   H  S   +  T IIH  S R   + K ++   S FY
Sbjct: 390 IAFLSEYLQTYKNIVLVVS--HDRSFLNEVATDIIHQHSERL-DYYKGNF---SQFY 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,571
Number of Sequences: 5004
Number of extensions: 41512
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)