Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0014
         (562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36366| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_36366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 561 HCSKYRNLKLKNMN 520
           HCSKYRN+K K +N
Sbjct: 264 HCSKYRNIKQKYIN 277


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = +2

Query: 284  IVISSISNLGNVTLNFFFITNKSFLINLSNPSLQI-CTIIRDL*EYNNYTRRVTYIVPIS 460
            +++S+   L  V+    +I   S L+ +S   L I C  +  +  Y     RV+ +V +S
Sbjct: 885  LILSAFFFLVFVSRYRLYIVRVSLLVLVSRYRLDIVCVSLVLVSRYRLDIVRVSLLVLVS 944

Query: 461  *QGYLYNTYYFISFLFVY*KFIFFSFKFLYLL 556
                     +F  FL V    I F+F FL+LL
Sbjct: 945  RYRLDIVRVFFFLFLLVDTVLILFTFLFLFLL 976


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,031,994
Number of Sequences: 59808
Number of extensions: 248668
Number of successful extensions: 493
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)