Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0014
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass...    28   4.0  
Z92973-1|CAB07493.2|  323|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z66562-4|CAA91465.1|  258|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U23516-8|AAG38879.1|  167|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z81528-5|CAB04287.1|  698|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 177 protein.
          Length = 1667

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +2

Query: 272 TVGQIVISSISNLGNVTLNFFF 337
           +V Q+V++S+SNL +  L+FFF
Sbjct: 560 SVTQLVVNSVSNLSSEPLSFFF 581


>Z92973-1|CAB07493.2|  323|Caenorhabditis elegans Hypothetical
           protein Y6G8.1 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 387 FAQLLETYENIIIILDELHTLSRYPDRVTCIIHTISFRFCSFIKNSYFL 533
           F  L+  Y  ++     ++ ++R  D  T +  +I+  FC  +K SYFL
Sbjct: 27  FVVLIVVYTTLLPFYLRINQVNRERDNKT-LFFSITNHFCFLVKTSYFL 74


>Z66562-4|CAA91465.1|  258|Caenorhabditis elegans Hypothetical
           protein F42E11.3 protein.
          Length = 258

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = +2

Query: 422 NYTRRVTYIVPIS*Q-GYLYNTYYFISFLFVY*KFIFFS---FKFLYLLQ 559
           N  R++ Y+  +S   G+L+ T+Y I FL V+ K  F S   FK ++++Q
Sbjct: 18  NVFRKIHYLELLSQMFGFLFYTFYLIIFL-VHGKTFFISEHTFKAIFIIQ 66


>U23516-8|AAG38879.1|  167|Caenorhabditis elegans Hypothetical
           protein B0416.2 protein.
          Length = 167

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 242 TNLKIIYL*RTVGQIVISSISNLGNVTLNF--FFITNKSFLINLSNPSLQICTII 400
           T   +I++   + + +++  S L +VT     FF+  KS L+ +S  + ++C  +
Sbjct: 6   TKFSLIFVALLLAEALVAQSSQLESVTRKPKPFFLVKKSMLVGMSETTEEVCQTV 60


>Z81528-5|CAB04287.1|  698|Caenorhabditis elegans Hypothetical
           protein F35E2.6 protein.
          Length = 698

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 232 IMLFN*FHYWFHKNNSSKCNFLSVIMFS-SLVLFN 131
           + +F  F  W+ K  SSK   L +++FS ++VL N
Sbjct: 349 VFVFEIFEKWYLKLTSSKLALLVILLFSLNMVLVN 383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,408,019
Number of Sequences: 27780
Number of extensions: 224015
Number of successful extensions: 563
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)