Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0011
         (733 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5Z3 Cluster: Double-stranded RNA-binding zinc finger...   167   2e-40
UniRef50_P32584 Cluster: Protein-S-isoprenylcysteine O-methyltra...    38   0.33 
UniRef50_Q875B9 Cluster: Part of an hypothetical protein Pa5D000...    36   0.77 
UniRef50_Q9FYL8 Cluster: F21J9.11; n=1; Arabidopsis thaliana|Rep...    33   7.2  
UniRef50_UPI0001555097 Cluster: PREDICTED: hypothetical protein;...    33   9.5  

>UniRef50_Q2F5Z3 Cluster: Double-stranded RNA-binding zinc finger
           protein JAZ; n=1; Bombyx mori|Rep: Double-stranded
           RNA-binding zinc finger protein JAZ - Bombyx mori (Silk
           moth)
          Length = 430

 Score =  167 bits (406), Expect = 2e-40
 Identities = 89/159 (55%), Positives = 91/159 (57%)
 Frame = +3

Query: 255 LPRRKIRNNEYSNAFGNYNGGYWSDDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQNP 434
           LPRRKIRNNEYSNAFGNYNGGYWSDDQ                             NQNP
Sbjct: 29  LPRRKIRNNEYSNAFGNYNGGYWSDDQGPGPFDHPPRPPPNFMFGPGPGPMFGPLPNQNP 88

Query: 435 FGRGFGPDGPAMRRPNRVERVKRYLCVVDLQRTV*KTFLEKYCTK*SLSTVVFVLLNWTL 614
           FGRGFGPDGPAMRRPNRVERVKRYL    L +   K    +   K          L    
Sbjct: 89  FGRGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLKNIPREILHKIEPEYCGVCALELDS 148

Query: 615 LECLVCITFQKNHAKNLRKWVSKSNDGGSNQKEIPLKSR 731
                     KNHAKNLRKWVSKSNDGGSNQKEIPLKSR
Sbjct: 149 FGMSRLHYLSKNHAKNLRKWVSKSNDGGSNQKEIPLKSR 187



 Score =  105 bits (251), Expect = 1e-21
 Identities = 47/57 (82%), Positives = 49/57 (85%)
 Frame = +2

Query: 500 KIFMRCGLTKDSLKNIPREILHKIEPEYCGVCALELDSFGMSRLHYLSKKSCEESEK 670
           +  MRCGLTKDSLKNIPREILHKIEPEYCGVCALELDSFGMSRLHYLSK   +   K
Sbjct: 111 RYLMRCGLTKDSLKNIPREILHKIEPEYCGVCALELDSFGMSRLHYLSKNHAKNLRK 167



 Score = 67.3 bits (157), Expect = 4e-10
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +1

Query: 172 MSIPFYKMNSREEYEMNEDCGWTEEPP 252
           MSIPFYKMNSREEYEMNEDCGWTEEPP
Sbjct: 1   MSIPFYKMNSREEYEMNEDCGWTEEPP 27


>UniRef50_P32584 Cluster: Protein-S-isoprenylcysteine
           O-methyltransferase; n=4; Saccharomycetaceae|Rep:
           Protein-S-isoprenylcysteine O-methyltransferase -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 239

 Score = 37.5 bits (83), Expect = 0.33
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = -3

Query: 494 SLHSVRSSHSRAIRTKSSSEWVLIG*RPKHWSWSWSKHEVRRGSWWMIKRSRTLVVRPIS 315
           ++H+   S S  ++TK  S+ VL+    K   +SWS+H    G +W    ++ L++ P+S
Sbjct: 139 AMHTAGHSFSHIVKTKKESDHVLV----KTGVYSWSRHPSYLGFFWWAIGTQLLLLNPLS 194

Query: 314 PIV 306
            ++
Sbjct: 195 LVI 197


>UniRef50_Q875B9 Cluster: Part of an hypothetical protein Pa5D0005;
           n=5; Pezizomycotina|Rep: Part of an hypothetical protein
           Pa5D0005 - Podospora anserina
          Length = 154

 Score = 36.3 bits (80), Expect = 0.77
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 410 KHWSWSWSKHEVRRGSW 360
           +HW W W+ H+VRRG W
Sbjct: 118 QHWQWRWNVHKVRRGDW 134


>UniRef50_Q9FYL8 Cluster: F21J9.11; n=1; Arabidopsis thaliana|Rep:
           F21J9.11 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 191

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +1

Query: 277 ITNTAMHLEITMGDIGLTTKVLDRLIIHQDPLRTSC-LDQDQDQCLGLYP-IKTHSEEDL 450
           I  TA+ L+    DI +++K L RLI     + +SC LD D+   LGL   I+  ++ D 
Sbjct: 89  IIETAVSLQFLAKDIDISSKALGRLISEVSNVESSCALDGDR---LGLGKIIRVSTKTDA 145

Query: 451 VRMALLC 471
              A+LC
Sbjct: 146 SNSAILC 152


>UniRef50_UPI0001555097 Cluster: PREDICTED: hypothetical protein;
           n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
           hypothetical protein - Ornithorhynchus anatinus
          Length = 545

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = +1

Query: 358 HQDPLRTSC---LDQDQDQCLGLYPIKTHSEEDLV-RMALLCEDL 480
           +Q+P+R  C   L +  DQC   +P +  S ED+V +++ LC++L
Sbjct: 484 YQEPVRGDCPQALKEITDQCRAYHPSERPSAEDIVDKLSALCDEL 528


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,101,247
Number of Sequences: 1657284
Number of extensions: 14397486
Number of successful extensions: 37484
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37467
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)