Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0011
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    32   0.54 
02_01_0594 - 4413016-4413091,4413201-4413268,4413387-4413482,441...    29   2.9  
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83...    29   3.8  
04_04_1275 + 32321161-32321285,32321849-32322071,32322187-323223...    29   5.0  
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    28   8.8  

>07_01_0162 +
           1138420-1138640,1138788-1138830,1139449-1140971,
           1141770-1142063,1142145-1142337,1142624-1142694,
           1142781-1144200
          Length = 1254

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -3

Query: 518 HNA*ISFNSLHSV--RSSHSRAIRTKSSSEWVLIG*RPKHWSWS-WSKHEVRRGSWWMI 351
           H A +  +S H V  RS H  A     +    + G RP HW  S   +   RRG WW++
Sbjct: 514 HEA-VDESSAHEVFWRSCHGVAYLCMENVVTEMAGCRPTHWPRSALVRQRRRRGGWWLV 571


>02_01_0594 -
           4413016-4413091,4413201-4413268,4413387-4413482,
           4413600-4413689,4413760-4413886,4413983-4414038,
           4414203-4414379,4414464-4415057
          Length = 427

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -3

Query: 401 SWSWSKHEVRRGSWWMIKRSRTLVVRPISPIVISKCIAVFVIPYLSSRKLGGSSV 237
           +W  S +E    S W    +R L+ RP+ P+ + +C  +     L++   G   V
Sbjct: 137 AWDLSDNEAAPASSWATLPNRALLCRPL-PLDVGRCTCIIAKETLAAAAAGARGV 190


>03_01_0104 -
           830884-831282,831511-832205,832368-833387,833570-833696,
           834342-834709,834780-835059,835137-835466
          Length = 1072

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +1

Query: 232 GWTEEPPSFREER*GITNTAMHLEITMGDIGLTTKVLDRL--IIHQDPLRTSCLDQDQDQ 405
           GW++ PP   E    + N A+ LE  +    +    +D L  +I  D  R  C+D   D 
Sbjct: 740 GWSDTPPWSLERPGCVLNMAIRLEGNLPVGAMIETTMDHLGVLIEDDAGRNVCID---DL 796

Query: 406 CLGLYPIKTHSEEDLVRMALL 468
                P K +    LV+ AL+
Sbjct: 797 SSITSPFKENDSFRLVKSALI 817


>04_04_1275 +
           32321161-32321285,32321849-32322071,32322187-32322309,
           32322391-32322519,32322939-32323024,32323233-32323356,
           32323531-32323579,32323808-32323890,32323975-32324042,
           32324187-32324264,32324460-32324547,32324640-32324756,
           32324844-32325176
          Length = 541

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 244 LQSSHNLHSFHILHGCSFCRTE-YS*C*NRYWNVYELFQSIQRYYRFFS 101
           L+  H+LH+FH + G      E Y      +WN + +    Q  Y F S
Sbjct: 250 LELPHSLHAFHRVSGSDSLNMEGYHTYRGGFWNYFSMGMDAQVSYEFHS 298


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 716 NLFLIRSTIIRFRHPFS-QILRMIFLKGNANETFQK 612
           +L +I S + R+  P S   L +I L GN+  TF+K
Sbjct: 427 SLLMICSMVARYAAPISYNFLNLIHLGGNSKTTFEK 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,139,499
Number of Sequences: 37544
Number of extensions: 386252
Number of successful extensions: 915
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)