Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0011
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28023| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-37)                 31   0.73 
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          30   2.2  
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  

>SB_28023| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-37)
          Length = 347

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 588 VFVLLNWTLLECLVCITFQKNHAKNLRKWVSKSNDGGSNQKEIPLKS 728
           +F  LN   +  ++CI F +N  ++LR WV   ++  SNQ+ + L +
Sbjct: 288 LFSFLN-AAINPIICIYFNRNLYQSLRSWVCGKSNQESNQEALRLSN 333


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 388  DQDQDQCLGLYPIKTHSEEDLVRMALLCEDLTEWRELK 501
            + D+ +C  LYP + + E DL     L +D T+W  +K
Sbjct: 3232 NSDEGRC-ALYPARCNFETDLCNWQQLTDDDTDWTRMK 3268


>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +1

Query: 247 PPSFREER*GITNTAMHLEITMGDIGLTTKVLDRLIIHQDPLRTSCLDQDQDQCL 411
           PP F ++        +  +  +GD  LT   LDR   H D +R S  ++  D+ L
Sbjct: 140 PPEFEQKE---YEAEIREDAAVGDDILTVTALDRCSKHPDKIRYSIAEESDDELL 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,303,777
Number of Sequences: 59808
Number of extensions: 449853
Number of successful extensions: 1294
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)