Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0011
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   5.2  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   5.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.2  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   6.8  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   6.8  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 276 NNEYSNAFGNYNGGYWSD 329
           NN Y+N + NYN   +++
Sbjct: 331 NNNYNNNYNNYNNNNYNN 348


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 232 HNLHSFHILHGCS 194
           H LH  H LHG S
Sbjct: 135 HGLHGLHGLHGLS 147


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 276 NNEYSNAFGNYNGGY 320
           N  Y+N + NYN  Y
Sbjct: 91  NYNYNNNYNNYNNNY 105



 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 276 NNEYSNAFGNYNGGY 320
           NN Y+N   NYN  Y
Sbjct: 95  NNNYNNYNNNYNTNY 109


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 379  SCLDQDQDQCLGLYPIKTHSEEDLVRMALLCE 474
            +C D D+++    Y   + ++ED V  +L  E
Sbjct: 1056 ACFDSDRERLYDCYVCYSPNDEDFVLHSLAVE 1087


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 645 KNHAKNLRKWVSKSND 692
           K   KNLRK  SK ND
Sbjct: 33  KKTIKNLRKVCSKKND 48


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 645 KNHAKNLRKWVSKSND 692
           K   KNLRK  SK ND
Sbjct: 7   KKTIKNLRKVCSKKND 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,635
Number of Sequences: 438
Number of extensions: 4324
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)