Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0009
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 2.3
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 3.1
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 4.1
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.1
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 26 4.1
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 5.4
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 5.4
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 7.1
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 7.1
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz... 25 7.1
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 9.4
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 164 PWNPIEGRYGSEREEHRICGGVRILSADLEIQVRDVRGDVAP 289
P+ P+EG Y + ++ HRI R A LE ++R V+ P
Sbjct: 3 PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 26.2 bits (55), Expect = 3.1
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Frame = -2
Query: 447 THPLPVQTRHAPVLRANPYSEVTDPICRLPXPTLFYRLEALH-----LGDLLRIWVRTGA 283
+HP ++ R+ P+ N Y+ + + L + L + + +G ++ ++V +G+
Sbjct: 253 SHPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGS 312
Query: 282 T-SPRTSLT*ISRSAESIRTP 223
T SP+ + I + +SI TP
Sbjct: 313 TVSPKYT---IQQYVQSIGTP 330
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -1
Query: 277 STYIPHLNFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQA 146
STY P L V D N F I+P+Y WN A A
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -2
Query: 216 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 79
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 437 SGCVRCRVWSMFVRYVRFSELVF*IMRPQKLYI 535
+GC + VW +VR+V F E LY+
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYL 140
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 362 FPYLHYSID*RLFTLETCCGYGYEPARHL 276
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 263 SPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 102
+P + P VSGH LR+ IS SM +ERS R ++ + +
Sbjct: 611 TPLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 75 RVFDGVTQSGLKTPPRGPGRV 137
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 75 RVFDGVTQSGLKTPPRGPGRV 137
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 102
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 263 SPEFQGPQRVSGHRRKCGALR 201
SPEF G RV+ HR G L+
Sbjct: 60 SPEFSGMSRVARHRLVYGLLK 80
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 180 SIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 79
++ GTR L+ K PD+ ++ G + L T
Sbjct: 8 NVNIQGTRVLKNKLGKIPDIDISTDGKYLLSAST 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,088
Number of Sequences: 5004
Number of extensions: 50186
Number of successful extensions: 143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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