Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0009
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1013 - 7931756-7935109 31 0.44
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.58
06_01_0350 + 2534422-2535615 31 0.77
07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383 29 2.4
12_02_0969 - 24936399-24936699,24936779-24936949,24937032-249378... 29 3.1
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 3.1
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 3.1
05_06_0098 + 25560158-25560925 28 4.1
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 5.4
12_02_0096 - 13573612-13573632,13573846-13573884,13574160-135744... 28 5.4
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 28 5.4
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 5.4
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 28 5.4
04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154 27 7.2
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 27 7.2
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 27 9.5
12_01_0801 + 7351171-7351198,7351383-7352020,7352098-7352559,735... 27 9.5
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 27 9.5
06_03_0262 + 18905352-18905481,18905570-18906003,18906082-189063... 27 9.5
06_02_0270 - 13613853-13614153,13614233-13614403,13614486-136153... 27 9.5
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503... 27 9.5
03_05_0088 + 20664580-20664696,20664796-20665218,20665297-206655... 27 9.5
02_03_0337 + 17898732-17899370,17899516-17899977,17900058-179006... 27 9.5
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 31.5 bits (68), Expect = 0.44
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 299 GYEPARHLHVHPSPEFQGPQRVSGHR 222
G+EP R + +HP+P+ + P R+ G +
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSK 904
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -2
Query: 474 TNIDQTRH------RTHPLPVQTRHAPVLRANP 394
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 0.77
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 169 PWNSNAQAEKKTLPGPLGGVFRP 101
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383
Length = 542
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 23 PEPVIGTVSIIVPSSLKTSVRRGNPKWPEDAAERSG 130
P+P IG ++VP + + R +W E AAER G
Sbjct: 196 PDPEIGAARLLVPRAARERARGMAREWKE-AAERKG 230
>12_02_0969 -
24936399-24936699,24936779-24936949,24937032-24937852,
24937946-24938407,24938486-24938890
Length = 719
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C ++ VP
Sbjct: 248 VHPTPRAQHDTNPSHHRSSCASIEVP 273
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 438 LPVQTRHAPVLRANPYSEVTDPICRLPXPTLFYRLEAL 325
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = -2
Query: 234 IRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGT 55
I+ P M S + + GFHG L+ KL PDL + HF LVF G
Sbjct: 188 IKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFNPATNQLVFPGRGA 244
Query: 54 I 52
I
Sbjct: 245 I 245
>05_06_0098 + 25560158-25560925
Length = 255
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 453 HRTHPLPVQTRHAPVLRANPYSEVTDPICRLPXPTLFYRLEALHLGDLLRIWVRTGATSP 274
HR P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -3
Query: 476 ARTSTRPGTGRIRFPSKPDTPRSSE 402
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>12_02_0096 -
13573612-13573632,13573846-13573884,13574160-13574493,
13574660-13574830,13574913-13575730,13575812-13576114,
13576352-13577085,13577174-13577303
Length = 849
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C + +VP
Sbjct: 348 VHPTPRAQHDASPSQHRSSCASTKVP 373
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 444 HPLPVQTRHAPVLRANPYSEVTDPICRLP 358
H L + RH P L+A P S + C+LP
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLP 135
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 464 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 378
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 290 PARHLHVHPSPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELER 153
P+ H +H S P+R RR+CGAL + + D + + R
Sbjct: 18 PSHHRLLHRSSLLPFPRRHHHRRRRCGALSIARASASAKDGVTVRR 63
>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
Length = 520
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 305 GYGYEPARHLHVHPSPEFQGPQRVSGHRRKCGALRVP 195
G+ +EP L HPSP+ GPQ ++ G P
Sbjct: 23 GFRFEPKEELVEHPSPQ-PGPQAIASIASSDGEFSSP 58
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 330 ALHLGDLLRIWVRTGATSPRTSLT*ISRSAESIRTPPQMRCSSRSEP 190
A H G I VRT + TS + A SI TP + CS+ + P
Sbjct: 38 ARHTGPRSHIAVRTCHVNDETSRSTCRNGATSIATPSVVACSALALP 84
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 416 ACRVWTGSGCVRCRVWSMFVR 478
ACR SGC+ CR W +R
Sbjct: 51 ACRGRVASGCLACRRWEHLLR 71
>12_01_0801 +
7351171-7351198,7351383-7352020,7352098-7352559,
7352641-7353105
Length = 530
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C + VP
Sbjct: 335 VHPTPRAQHDASPSQHRSSCASTEVP 360
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 373 WIRNFGIRIGSEDRGVSGLDGKRMRPVPGLVDVRALCSF*RVSILNNAASKTV 531
W R G R+G ++ G+ R VPG+V R L + +V + KTV
Sbjct: 84 WERVVGHRVGGDEAA-----GEEEREVPGVVGCRMLAASGQVGCVLGKGGKTV 131
>06_03_0262 +
18905352-18905481,18905570-18906003,18906082-18906303,
18906381-18906842,18906935-18907755,18907838-18908008,
18908088-18908347,18908453-18908508,18908786-18908824,
18909711-18909764
Length = 882
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C + VP
Sbjct: 375 VHPTPRAQHDASPSQHRSSCSSTEVP 400
>06_02_0270 -
13613853-13614153,13614233-13614403,13614486-13615318,
13615401-13615746,13615940-13616127,13616238-13616408
Length = 669
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C + VP
Sbjct: 194 VHPTPRAQHDTSPSQHRSSCASTEVP 219
>03_06_0285 +
32848085-32848988,32849057-32849245,32850136-32850311,
32850569-32851141
Length = 613
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 23 PEPVIGTVSIIVPSSLKTSVRRGNPKWPEDAAERSG 130
P+P IG +VP + + R +W +DAAE+ G
Sbjct: 209 PDPEIGAARPMVPQAARERARGMAREW-KDAAEKKG 243
>03_05_0088 +
20664580-20664696,20664796-20665218,20665297-20665518,
20665597-20666058,20666140-20666300,20666422-20666973,
20667056-20667125,20667141-20667226,20667306-20667673,
20668002-20668018
Length = 825
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C + VP
Sbjct: 367 VHPTPRAQHDASPSQHRSSCASTEVP 392
>02_03_0337 +
17898732-17899370,17899516-17899977,17900058-17900688,
17900819-17900888,17900971-17901141,17901221-17901479,
17901918-17901956,17902900-17902914
Length = 761
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C + VP
Sbjct: 326 VHPTPRAQHDASPSQHRSSCASTEVP 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,345,731
Number of Sequences: 37544
Number of extensions: 379756
Number of successful extensions: 1281
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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