Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0009
(535 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 2.8
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 2.8
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 2.8
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 2.8
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 6.4
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 6.4
AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical... 27 6.4
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 27 6.4
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 27 8.5
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 27 8.5
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 500 LTR*NEHNARTSTRPGTGRIRFPSKPDT 417
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 500 LTR*NEHNARTSTRPGTGRIRFPSKPDT 417
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 500 LTR*NEHNARTSTRPGTGRIRFPSKPDT 417
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 500 LTR*NEHNARTSTRPGTGRIRFPSKPDT 417
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -1
Query: 250 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 122
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 234 IRTPPQMRCSSRSEPYLPSIGFHGT 160
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
>AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical
protein C31B8.1 protein.
Length = 229
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 427 NPTRPGPQSQSLFRSYGSNLPTSXTYIILSTRGSSP 320
+P + P +Q LF S+G LP I + SSP
Sbjct: 19 SPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSP 54
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -2
Query: 210 CSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVP 37
C++ P+L I T+ +RQ + P+L +A H + FK E T+P
Sbjct: 80 CTTNFTPFLRPITVPVTKGVRQGDPISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIP 137
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 198 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 46
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1216 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1264
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 198 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 46
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 198 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 46
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 198 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 46
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1216 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1264
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 198 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 46
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 198 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 46
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 458 PGTGRIRFPSKPDTPRSSEPILIPKLRI 375
P ++ SKP TP + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,212,818
Number of Sequences: 27780
Number of extensions: 291007
Number of successful extensions: 1009
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -