Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0007
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.6  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   3.4  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   4.5  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   6.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.9  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 219 HRPHPLPVQTRHAPVLRANPYS 154
           +R HPL + + H  +L  NP S
Sbjct: 332 NRCHPLSLSSDHQAMLHHNPMS 353


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -3

Query: 395 RLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFE-AALY*NTNSLNEHNARTSTRPG 219
           RLT R+I+   +N      ++ + F+  S  + + F+  +L+    S+N+ N     +P 
Sbjct: 221 RLTERQIKIWFQNRRMKAKKDTK-FTEQS--VTSTFDFLSLHPAETSMNDANRNDCAKPL 277

Query: 218 TGRIRFPSKPDTP 180
           T     P  P+TP
Sbjct: 278 TQIRNIPGPPETP 290


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -3

Query: 395 RLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFE-AALY*NTNSLNEHNARTSTRPG 219
           RLT R+I+   +N      ++ + F+  S  + + F+  +L+    S+N+ N     +P 
Sbjct: 221 RLTERQIKIWFQNRRMKAKKDTK-FTEQS--VTSTFDFLSLHPAETSMNDVNRNDCAKPL 277

Query: 218 TGRIRFPSKPDTP 180
           T     P  P+TP
Sbjct: 278 TQIRNIPGPPETP 290


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 293 LYIFNMTLAKIVLRFGLDPDPRSP 364
           L +  + LA +V  F  DP  R+P
Sbjct: 444 LLVSKVALASVVKDFVFDPTERTP 467


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 10  DLENSGEGCTWRCRAGSYPYPQQVS 84
           D  N G+G + +C      YP  +S
Sbjct: 613 DSINEGDGVSVQCTVSKGDYPLNIS 637


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,980
Number of Sequences: 336
Number of extensions: 2979
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)