Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0007
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0098 + 25560158-25560925 32 0.40
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.70
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 2.1
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 3.7
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 3.7
12_02_0423 + 18944555-18945226,18945309-18945545 28 4.9
07_03_0078 - 13147741-13148913 28 4.9
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 6.5
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 6.5
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 27 8.6
01_01_0476 + 3505799-3506479,3506639-3506897,3508427-3508550,350... 27 8.6
>05_06_0098 + 25560158-25560925
Length = 255
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 219 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 40
HRP P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -2
Query: 240 TNIDQTRH------RPHPLPVQTRHAPVLRANP 160
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 210 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 121
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 204 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 91
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 216 RPHPLPVQTRHAPVLRANPYSEVTDP 139
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>12_02_0423 + 18944555-18945226,18945309-18945545
Length = 302
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 476 GESDCLIKTKHAMALAGVDAM*FLPSALNVNVKKFKQA 589
GE CL+ T A+A DAM AL+ +V +FK +
Sbjct: 258 GEGRCLVPTSLVRAIADDDAMATSNPALSRDVNRFKDS 295
>07_03_0078 - 13147741-13148913
Length = 390
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 346 SGPAFSGLPRIFLAVSRVGFVSCAI 420
SGP + G R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -3
Query: 242 ARTSTRPGTGRIRFPSKPDTPRSSE 168
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 230 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 144
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 237 NIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHLGDLLR 70
N+D RP P PV LRA PY P + + L + L ++++ D R
Sbjct: 8 NLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYVNDCPR 65
>01_01_0476 +
3505799-3506479,3506639-3506897,3508427-3508550,
3508922-3509030
Length = 390
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 239 VRYVRLAS*YFNIMRPQKLYIFNMTLAKIVLRFGLDPDPR 358
VR V+L Y I+ +K+Y++N T K++ + +P+
Sbjct: 109 VRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQIETQSNPK 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,387,045
Number of Sequences: 37544
Number of extensions: 377211
Number of successful extensions: 1248
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -