Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0006
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45969| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.11)                 31   0.65 
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               29   2.0  
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_18915| Best HMM Match : Pox_A32 (HMM E-Value=0.052)                 28   6.1  
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_5648| Best HMM Match : rve (HMM E-Value=6.1e-13)                    27   8.0  
SB_55886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_29678| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_45969| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.11)
          Length = 735

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 338 TDTLICACYATLSRHIGFTVFVFRHVITNRVKPF 439
           T+TLI    A  +RH+G +V+V    +T+  KPF
Sbjct: 439 TNTLIILNLALSARHVGISVWVITQQLTSITKPF 472


>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 716

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/55 (38%), Positives = 26/55 (47%)
 Frame = +2

Query: 317 LIKYLITTDTLICACYATLSRHIGFTVFVFRHVITNRVKPF*NSTSPKYQILKKK 481
           LI   IT   L   CY T +  I    F  RH + NR+ PF   T  KYQ  K++
Sbjct: 391 LISVFITFSIL--QCYHT-NPDINEMPFWMRHFVCNRLGPFLRVTHVKYQRAKEE 442


>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 248 QKIMR*RSLRSIRDGPSSLLNILLIKYLITTDTLICACYATLS 376
           Q ++   +L  + D     +N+L +++  +TDTLI AC   L+
Sbjct: 608 QPLLHRAALDGVNDANCDSVNVLGLRWDTSTDTLILACKELLA 650


>SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 957

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
 Frame = +2

Query: 242 VGQKIMR*RSLRSIRDGPSSLLNILLIKYLIT-TDTLICACYATLSRHIGFTVFVFRHVI 418
           VGQ  +  R + ++ +G ++L  I+L  Y+   +D L+   ++  +RH+G +V+V    +
Sbjct: 470 VGQIDILLRFVSALFEGTNTL--IILDDYVKRRSDQLVNLAFS--ARHVGISVWVITQQL 525

Query: 419 TNRVKPF 439
           T+  KPF
Sbjct: 526 TSITKPF 532


>SB_18915| Best HMM Match : Pox_A32 (HMM E-Value=0.052)
          Length = 430

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 374 SRHIGFTVFVFRHVITNRVKPF 439
           +RH+G +V+V R  +T+  KPF
Sbjct: 265 ARHVGISVWVIRQQLTSITKPF 286


>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 373  QRSIARTNKCIRSN*VFN*EDIKQARR--TITNRAKTSS 263
            Q++   TN CI +N  +N  ++KQ +   T T  AKTS+
Sbjct: 1073 QQTTTTTNICINNNNSYNYNNLKQQQTLITATTTAKTSN 1111


>SB_5648| Best HMM Match : rve (HMM E-Value=6.1e-13)
          Length = 1606

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 374 SRHIGFTVFVFRHVITNRVKPF 439
           +RH+G +V+V    +TN  KPF
Sbjct: 509 ARHVGISVWVITQQLTNITKPF 530


>SB_55886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 377 RHIGFTVFVFRHVITNRVKPF 439
           RH+GF+V+V    +T+  KPF
Sbjct: 394 RHVGFSVWVITQQLTSITKPF 414


>SB_29678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 851

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 338 TDTLICA--CYATLSRHIGFTVFVFRHVITNRVKPF 439
           T+TLI    C A+ +RH+G +V+V    +T+  KPF
Sbjct: 347 TNTLIILDDCAAS-ARHVGISVWVITQQLTSITKPF 381


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,073,082
Number of Sequences: 59808
Number of extensions: 266483
Number of successful extensions: 677
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)