Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0006
         (564 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060936-1|AAL28484.1|  585|Drosophila melanogaster GM07803p pro...    29   4.3  
AE014134-1643|AAS64663.1| 1494|Drosophila melanogaster CG33298-P...    29   4.3  
AE014134-1642|AAS64662.1| 1517|Drosophila melanogaster CG33298-P...    29   4.3  

>AY060936-1|AAL28484.1|  585|Drosophila melanogaster GM07803p
           protein.
          Length = 585

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 343 YTYLCVLCYVVKA-YWIYCICFSSRHH 420
           Y  +C+ C+ V++ YW+  +CF+S  H
Sbjct: 482 YDSVCMNCFGVRSSYWVIFVCFASAVH 508


>AE014134-1643|AAS64663.1| 1494|Drosophila melanogaster CG33298-PA,
            isoform A protein.
          Length = 1494

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 343  YTYLCVLCYVVKA-YWIYCICFSSRHH 420
            Y  +C+ C+ V++ YW+  +CF+S  H
Sbjct: 1414 YDSVCMNCFGVRSSYWVIFVCFASAVH 1440


>AE014134-1642|AAS64662.1| 1517|Drosophila melanogaster CG33298-PB,
            isoform B protein.
          Length = 1517

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 343  YTYLCVLCYVVKA-YWIYCICFSSRHH 420
            Y  +C+ C+ V++ YW+  +CF+S  H
Sbjct: 1414 YDSVCMNCFGVRSSYWVIFVCFASAVH 1440


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,508,315
Number of Sequences: 53049
Number of extensions: 367277
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2193288294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)