Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0006
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine re...    29   3.1  
U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate fi...    28   5.3  
U80028-7|AAG23984.1|  370|Caenorhabditis elegans Serpentine rece...    27   7.0  
AF130443-1|AAD28468.1|  956|Caenorhabditis elegans EAG K+ channe...    27   7.0  
AF036695-1|AAB88348.2|  956|Caenorhabditis elegans Egg laying de...    27   7.0  
Z84574-2|CAB06542.1|  488|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 3 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 352 LCVLCYVVKAYWIYCICFSSRHHQSSKTIL 441
           LC++C  +  Y ++ I FS + H +SK +L
Sbjct: 29  LCIMCIPISIYSLWRIYFSVKLHFNSKIVL 58


>U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate
           filament, d protein 2 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 415 DVTKNKYSKSNMP*QRSIARTNKCIRSN*VFN*EDIKQARRTITNR 278
           D  ++K+S S+   Q  + R N CI  + +   E+I +ARR  TN+
Sbjct: 208 DKERSKHSSSS---QELLKRLNGCISQHDIAIREEISKARRDTTNK 250


>U80028-7|AAG23984.1|  370|Caenorhabditis elegans Serpentine
           receptor, class w protein124 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 325 IPNYYGYTYLCVLCYVVKAYWIYCICFSSRHHQSSKTILK-*H*SEVSNFEKK 480
           I N++GY +  ++      + I C+  SS++  ++ ++L   + S+V  F+KK
Sbjct: 306 ILNFFGYMFTVLISVNACTHLIVCLIVSSQYRSTAISVLSCGYISQVPYFKKK 358


>AF130443-1|AAD28468.1|  956|Caenorhabditis elegans EAG K+ channel
           EGL-2 protein.
          Length = 956

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = +1

Query: 325 IPNYYGY---TYLCVLC-YVVKAYWIYCICF 405
           + NY  Y   T L +LC YV+ A+W+ C+ F
Sbjct: 354 LDNYLEYGAATLLLLLCAYVIVAHWLACVWF 384


>AF036695-1|AAB88348.2|  956|Caenorhabditis elegans Egg laying
           defective protein 2 protein.
          Length = 956

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = +1

Query: 325 IPNYYGY---TYLCVLC-YVVKAYWIYCICF 405
           + NY  Y   T L +LC YV+ A+W+ C+ F
Sbjct: 354 LDNYLEYGAATLLLLLCAYVIVAHWLACVWF 384


>Z84574-2|CAB06542.1|  488|Caenorhabditis elegans Hypothetical
           protein F33E2.3 protein.
          Length = 488

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 331 NYYGYTYLCVLCYVVKAYWIYCICFSSR 414
           NY G TYL  +CY++++     IC  +R
Sbjct: 314 NYNGLTYLAGICYLMRSITDEIICDINR 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,619,800
Number of Sequences: 27780
Number of extensions: 212863
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)