Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0004
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0098 + 25560158-25560925 32 0.58
06_01_1013 - 7931756-7935109 31 0.77
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 1.0
06_01_0350 + 2534422-2535615 31 1.3
12_02_0407 - 18654134-18654172,18654913-18655803 30 2.4
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 3.1
07_03_0078 - 13147741-13148913 29 4.1
12_02_0969 - 24936399-24936699,24936779-24936949,24937032-249378... 29 5.4
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 5.4
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 5.4
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 5.4
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 9.5
12_02_0096 - 13573612-13573632,13573846-13573884,13574160-135744... 28 9.5
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 28 9.5
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 9.5
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 28 9.5
>05_06_0098 + 25560158-25560925
Length = 255
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -1
Query: 453 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 274
HRP P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 31.5 bits (68), Expect = 0.77
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 299 GYEPARHLHVHPSPEFQGPQRVSGHR 222
G+EP R + +HP+P+ + P R+ G +
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSK 904
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -1
Query: 474 TNIDQTRH------RPHPLPVQTRHAPVLRANP 394
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 169 PWNSNAQAEKKTLPGPLGGVFRP 101
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 26 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 190
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 444 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 355
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>07_03_0078 - 13147741-13148913
Length = 390
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 580 SGPAFSGLPRIFLAVSRVGFVSCAIGTF 663
SGP + G R+F+A+S +G ++ ++ +
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSLALY 250
>12_02_0969 -
24936399-24936699,24936779-24936949,24937032-24937852,
24937946-24938407,24938486-24938890
Length = 719
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C ++ VP
Sbjct: 248 VHPTPRAQHDTNPSHHRSSCASIEVP 273
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 438 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 325
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 450 RPHPLPVQTRHAPVLRANPYSEVTDP 373
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = -1
Query: 234 IRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGT 55
I+ P M S + + GFHG L+ KL PDL + HF LVF G
Sbjct: 188 IKLYPHM--SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFNPATNQLVFPGRGA 244
Query: 54 I 52
I
Sbjct: 245 I 245
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -2
Query: 476 ARTSTRPGTGRIRFPSKPDTPRSSE 402
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>12_02_0096 -
13573612-13573632,13573846-13573884,13574160-13574493,
13574660-13574830,13574913-13575730,13575812-13576114,
13576352-13577085,13577174-13577303
Length = 849
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 272 VHPSPEFQGPQRVSGHRRKCGALRVP 195
VHP+P Q S HR C + +VP
Sbjct: 348 VHPTPRAQHDASPSQHRSSCASTKVP 373
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -1
Query: 492 LKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHL 319
+K + N+D RP P PV LRA PY P + + L + L ++++
Sbjct: 1 MKPSPAANLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYV 60
Query: 318 GDLLR 304
D R
Sbjct: 61 NDCPR 65
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 464 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 378
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 290 PARHLHVHPSPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELER 153
P+ H +H S P+R RR+CGAL + + D + + R
Sbjct: 18 PSHHRLLHRSSLLPFPRRHHHRRRRCGALSIARASASAKDGVTVRR 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,461,779
Number of Sequences: 37544
Number of extensions: 546821
Number of successful extensions: 1941
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1940
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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