Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0003
         (768 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    27   0.17 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   6.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   6.2  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 707 PERKPEKRLTTSKEASSAQI 648
           P   PE+RLT SK+ASS +I
Sbjct: 101 PSPPPEERLTPSKDASSKRI 120


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 581 LRGLVRVPYRYFSSLPPRAGSG*FARCWLP 670
           +  LV  P    +SLP  + SG F   WLP
Sbjct: 187 ISALVNAPSVSPASLPSISPSGGFLPKWLP 216


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 519 LAPDLPSNCSSLKYLKCTHSDYEA 590
           +A ++  N SSL+YL   ++D  A
Sbjct: 481 VALEVAGNISSLRYLNLDYNDLSA 504


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,090
Number of Sequences: 336
Number of extensions: 3972
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)