Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0003
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    27   0.25 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.5  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = -2

Query: 698 KPEKRL-----TTSKEASSAQITHSRHGEVVTKNNDTGLLRGLVIGMSTL 564
           KP KRL     TT+   S   I       + +++ D GL+ G+VIG+++L
Sbjct: 94  KPFKRLELFNITTTTIHSIHSIDGDEENGLTSESTDPGLVAGIVIGVTSL 143


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 644 G*FARCWLPWMW*AVSQASSPESNPDSRYP*QPW 745
           G F  CWLP+    ++    P   PD   P   W
Sbjct: 313 GGFVACWLPFFILYLATPFVPVEPPDILMPALTW 346


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 503 WNTAAAGTRLALQLFLVKIFKVYSFRLRGLVRVPYRY 613
           WN A     LA+ LFL  +  V+   L  L  V  RY
Sbjct: 39  WNLATDRAGLAILLFLFSVATVFGNTLVILAVVRERY 75


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +1

Query: 142 VAIRMPPVIPINH-----YLGVLKTN 204
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +1

Query: 142 VAIRMPPVIPINH-----YLGVLKTN 204
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +1

Query: 142 VAIRMPPVIPINH-----YLGVLKTN 204
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 130 NSWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
           N  +VAR   A  F   V IN+     +  R+   L+ T+N
Sbjct: 351 NQAVVARHDEAMIFPADVKINRGLXWIISDRMPVFLLXTLN 391


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 119  RRKTNISESICQRCFHQ 69
            RR+ N++E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 734 TGNGNQGSIPERKPEKRLTTSKEASSAQ 651
           + N N  +  E   E++ TTS EA   +
Sbjct: 751 SANANSSTSSEESREEKATTSLEAEKRE 778


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,741
Number of Sequences: 438
Number of extensions: 5039
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)