Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0002
(406 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q2F5J1 Cluster: 26S proteasome non-ATPase regulatory su... 99 4e-20
UniRef50_Q7KMP8 Cluster: 26S proteasome regulatory complex subun... 64 1e-09
UniRef50_Q9UNM6 Cluster: 26S proteasome non-ATPase regulatory su... 63 2e-09
UniRef50_Q86EV4 Cluster: Clone ZZD1379 mRNA sequence; n=3; Bilat... 57 2e-07
UniRef50_Q5CNJ9 Cluster: 26S proteasome subunit P40.5; n=2; Cryp... 56 3e-07
UniRef50_Q22253 Cluster: Putative uncharacterized protein rpn-9;... 55 6e-07
UniRef50_A2DH21 Cluster: PCI domain containing protein; n=1; Tri... 53 2e-06
UniRef50_Q9US13 Cluster: Probable 26S proteasome regulatory subu... 53 2e-06
UniRef50_Q54NQ0 Cluster: 26S proteasome non-ATPase regulatory su... 53 2e-06
UniRef50_Q4N2Q4 Cluster: 26S proteasome regulatory subunit, puta... 53 2e-06
UniRef50_Q4PBL8 Cluster: Putative uncharacterized protein; n=1; ... 50 1e-05
UniRef50_Q10Q05 Cluster: PCI domain containing protein, expresse... 50 2e-05
UniRef50_UPI0000498B22 Cluster: 26S proteasome regulatory subuni... 47 1e-04
UniRef50_Q8RWF0 Cluster: 26S proteasome subunit-like protein; n=... 46 4e-04
UniRef50_A0DX64 Cluster: Chromosome undetermined scaffold_68, wh... 45 5e-04
UniRef50_A4SAU9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 44 9e-04
UniRef50_Q8IJA0 Cluster: 26S proteasome subunit, putative; n=7; ... 44 9e-04
UniRef50_Q23RE5 Cluster: PCI domain containing protein; n=1; Tet... 44 0.001
UniRef50_A2DXD4 Cluster: PCI domain containing protein; n=1; Tri... 42 0.004
UniRef50_Q5AD74 Cluster: Likely 26S proteasome regulatory partic... 42 0.006
UniRef50_Q4WLP7 Cluster: Proteasome regulatory particle subunit ... 42 0.006
UniRef50_UPI00015B4210 Cluster: PREDICTED: similar to 26S protea... 41 0.011
UniRef50_Q387U2 Cluster: Proteasome regulatory non-ATP-ase subun... 40 0.025
UniRef50_Q5KLK2 Cluster: Putative uncharacterized protein; n=1; ... 40 0.025
UniRef50_Q04062 Cluster: 26S proteasome regulatory subunit RPN9;... 40 0.025
UniRef50_A7PBB9 Cluster: Chromosome chr16 scaffold_10, whole gen... 37 0.13
UniRef50_Q1JSW4 Cluster: 26s proteasome regulatory subunit rpn9,... 36 0.23
UniRef50_UPI0000E23EF2 Cluster: PREDICTED: hypothetical protein;... 36 0.41
UniRef50_Q9N4C2 Cluster: Probable cleavage and polyadenylation s... 34 1.2
UniRef50_A2QPJ0 Cluster: Putative uncharacterized protein; n=1; ... 31 6.6
UniRef50_Q0DY34 Cluster: Os02g0718600 protein; n=1; Oryza sativa... 31 8.7
>UniRef50_Q2F5J1 Cluster: 26S proteasome non-ATPase regulatory
subunit 13; n=3; Coelomata|Rep: 26S proteasome
non-ATPase regulatory subunit 13 - Bombyx mori (Silk
moth)
Length = 385
Score = 98.7 bits (235), Expect = 4e-20
Identities = 50/50 (100%), Positives = 50/50 (100%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI
Sbjct: 279 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 328
Score = 80.2 bits (189), Expect = 1e-14
Identities = 41/56 (73%), Positives = 41/56 (73%)
Frame = -2
Query: 252 GHIDQVRSCATVQWVRSXXXXXXXXXXXXXXVDAWREAVSAAADLLATVQPDLIIA 85
GHIDQVRSCATVQWVR VDAWREAVSAAADLLATVQPDLIIA
Sbjct: 330 GHIDQVRSCATVQWVRPRALAGAGAVLTAARVDAWREAVSAAADLLATVQPDLIIA 385
>UniRef50_Q7KMP8 Cluster: 26S proteasome regulatory complex subunit
p39A; n=6; Diptera|Rep: 26S proteasome regulatory
complex subunit p39A - Drosophila melanogaster (Fruit
fly)
Length = 382
Score = 63.7 bits (148), Expect = 1e-09
Identities = 29/50 (58%), Positives = 40/50 (80%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
KI++LCLMEM F +S+ +R +SF +IA+E ++P EVELLIMKALA L+
Sbjct: 276 KISLLCLMEMTFKRSAIERAISFTDIAQETKLPAKEVELLIMKALALDLV 325
>UniRef50_Q9UNM6 Cluster: 26S proteasome non-ATPase regulatory
subunit 13; n=30; Eumetazoa|Rep: 26S proteasome
non-ATPase regulatory subunit 13 - Homo sapiens (Human)
Length = 376
Score = 63.3 bits (147), Expect = 2e-09
Identities = 28/51 (54%), Positives = 42/51 (82%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
KI +LCLMEM F + ++ R+L+FEEIA+ A+I ++EVELL+MKAL+ L++
Sbjct: 271 KIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVK 321
>UniRef50_Q86EV4 Cluster: Clone ZZD1379 mRNA sequence; n=3;
Bilateria|Rep: Clone ZZD1379 mRNA sequence - Schistosoma
japonicum (Blood fluke)
Length = 386
Score = 56.8 bits (131), Expect = 2e-07
Identities = 24/51 (47%), Positives = 39/51 (76%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
K+ +LCL+EM F + +++R L+F EI+ R+P+D+VE +MKAL+ KLI+
Sbjct: 281 KVTLLCLVEMIFRRPTNKRTLTFVEISSTTRVPIDQVEHFLMKALSLKLIK 331
>UniRef50_Q5CNJ9 Cluster: 26S proteasome subunit P40.5; n=2;
Cryptosporidium|Rep: 26S proteasome subunit P40.5 -
Cryptosporidium hominis
Length = 430
Score = 56.0 bits (129), Expect = 3e-07
Identities = 26/53 (49%), Positives = 39/53 (73%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIEDI 246
K A L LM++AF K+ ++R L+F+EIA+ RI +E+ELL+MKA+ LI+ I
Sbjct: 324 KTATLALMDLAFRKNKNERVLTFDEIAKHCRIGANEIELLVMKAINMNLIKGI 376
>UniRef50_Q22253 Cluster: Putative uncharacterized protein rpn-9;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein rpn-9 - Caenorhabditis elegans
Length = 387
Score = 54.8 bits (126), Expect = 6e-07
Identities = 24/50 (48%), Positives = 38/50 (76%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
KI ++ +ME+A ++ + R +SF+EIA + +IP DEVE L+MKAL++ LI
Sbjct: 280 KIRLMAVMELAVSRPTKARSVSFKEIATKCQIPFDEVEFLVMKALSKDLI 329
>UniRef50_A2DH21 Cluster: PCI domain containing protein; n=1;
Trichomonas vaginalis G3|Rep: PCI domain containing
protein - Trichomonas vaginalis G3
Length = 369
Score = 53.2 bits (122), Expect = 2e-06
Identities = 24/50 (48%), Positives = 35/50 (70%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
KIA+ +++ F + R SFEEI+RE +PLD VE+L+MKAL+ +LI
Sbjct: 264 KIALSVFLQLIFARPFESRIFSFEEISRECHVPLDRVEILVMKALSTELI 313
>UniRef50_Q9US13 Cluster: Probable 26S proteasome regulatory subunit
rpn9; n=1; Schizosaccharomyces pombe|Rep: Probable 26S
proteasome regulatory subunit rpn9 - Schizosaccharomyces
pombe (Fission yeast)
Length = 381
Score = 53.2 bits (122), Expect = 2e-06
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIEDI 246
KI ++ L+E+ F +QR L+F+ IAR RIP +EVELLIM+AL+ LI +
Sbjct: 276 KIRLMALIELVFQLPPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGV 328
>UniRef50_Q54NQ0 Cluster: 26S proteasome non-ATPase regulatory
subunit 13; n=1; Dictyostelium discoideum AX4|Rep: 26S
proteasome non-ATPase regulatory subunit 13 -
Dictyostelium discoideum AX4
Length = 385
Score = 52.8 bits (121), Expect = 2e-06
Identities = 24/51 (47%), Positives = 38/51 (74%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
KI+IL L+E+AF S +R +SF +IA+ ++PL E+E L+MK+L+ LI+
Sbjct: 280 KISILSLLELAFRTPSDKRSISFSKIAQATKLPLGEIEHLLMKSLSLNLIK 330
>UniRef50_Q4N2Q4 Cluster: 26S proteasome regulatory subunit,
putative; n=3; Piroplasmida|Rep: 26S proteasome
regulatory subunit, putative - Theileria parva
Length = 390
Score = 52.8 bits (121), Expect = 2e-06
Identities = 24/51 (47%), Positives = 34/51 (66%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
K+ ++ LM +AF K + QR LSF+EI +I +DEVE I+KAL LI+
Sbjct: 285 KLTLIALMNLAFRKPNKQRSLSFQEIVEHCKIQMDEVEPFILKALGCNLIQ 335
>UniRef50_Q4PBL8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 395
Score = 50.4 bits (115), Expect = 1e-05
Identities = 22/50 (44%), Positives = 35/50 (70%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
K+ ++ L+E F +++ R + F IA E ++P+DEVE L+MKAL+ KLI
Sbjct: 288 KMCLMSLIESVFKRAADDRTIGFATIAAETKLPVDEVEHLVMKALSLKLI 337
>UniRef50_Q10Q05 Cluster: PCI domain containing protein, expressed;
n=8; Oryza sativa|Rep: PCI domain containing protein,
expressed - Oryza sativa subsp. japonica (Rice)
Length = 385
Score = 49.6 bits (113), Expect = 2e-05
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIEDI 246
KI ILCLME+ F+++S R + IA ++ + +VE L+MK+L+ LIE I
Sbjct: 279 KINILCLMEIIFSRASEDRTIPLSVIAERTKLSISDVEYLLMKSLSVHLIEGI 331
>UniRef50_UPI0000498B22 Cluster: 26S proteasome regulatory subunit;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: 26S proteasome
regulatory subunit - Entamoeba histolytica HM-1:IMSS
Length = 377
Score = 47.2 bits (107), Expect = 1e-04
Identities = 21/51 (41%), Positives = 34/51 (66%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
K +I+ LMEM F S R SF++I+ +P++ VE+LIM+AL+ L++
Sbjct: 275 KASIVSLMEMIFRSPSQNRTFSFDQISSTTHVPIEYVEILIMRALSLGLVK 325
>UniRef50_Q8RWF0 Cluster: 26S proteasome subunit-like protein; n=7;
core eudicotyledons|Rep: 26S proteasome subunit-like
protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 386
Score = 45.6 bits (103), Expect = 4e-04
Identities = 21/53 (39%), Positives = 35/53 (66%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIEDI 246
KI ILCL+E+ F++ + R + IA ++ +++VE L+MK+L+ LIE I
Sbjct: 280 KINILCLIEIIFSRPAEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGI 332
>UniRef50_A0DX64 Cluster: Chromosome undetermined scaffold_68, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_68,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 368
Score = 45.2 bits (102), Expect = 5e-04
Identities = 17/51 (33%), Positives = 36/51 (70%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
KI I+ +E+AF+ + R +FEE+A+ + +PL ++E L+M+ +++ L++
Sbjct: 264 KIRIMAFLELAFSLPKNNRVCTFEELAQVSELPLSDIERLVMRTISKGLVK 314
>UniRef50_A4SAU9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 398
Score = 44.4 bits (100), Expect = 9e-04
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIEDI 246
KI IL L+++ F + R++S +IA + ++ D VE L+MKAL+ LIE I
Sbjct: 294 KITILSLLQIIFKLPAEHREISLSDIAVKTKLTTDGVEYLLMKALSVHLIEGI 346
>UniRef50_Q8IJA0 Cluster: 26S proteasome subunit, putative; n=7;
Plasmodium|Rep: 26S proteasome subunit, putative -
Plasmodium falciparum (isolate 3D7)
Length = 393
Score = 44.4 bits (100), Expect = 9e-04
Identities = 18/50 (36%), Positives = 34/50 (68%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
K+ +L LM++AF K + +SF EIA+ +I ++EVE +++ A ++ +I
Sbjct: 287 KMTLLALMDLAFKKKKQREDISFHEIAQHCKIDINEVEKMLITAKSKNII 336
>UniRef50_Q23RE5 Cluster: PCI domain containing protein; n=1;
Tetrahymena thermophila SB210|Rep: PCI domain containing
protein - Tetrahymena thermophila SB210
Length = 378
Score = 44.0 bits (99), Expect = 0.001
Identities = 16/51 (31%), Positives = 35/51 (68%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
KI I+ +++ FN + R +SF+++A + P++E+E L+M+++A L++
Sbjct: 274 KIRIMAFLDLVFNLPKNDRTISFQKVAERTKQPVNEIEYLLMRSMALGLVK 324
>UniRef50_A2DXD4 Cluster: PCI domain containing protein; n=1;
Trichomonas vaginalis G3|Rep: PCI domain containing
protein - Trichomonas vaginalis G3
Length = 366
Score = 42.3 bits (95), Expect = 0.004
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
KI + + F K RK+ F EI+ +IP+++VE L++KA A +I+
Sbjct: 263 KIVMSIFYTLVFKKPFKNRKIQFSEISEACQIPIEKVEYLVLKAFAHDIIK 313
>UniRef50_Q5AD74 Cluster: Likely 26S proteasome regulatory particle
subunit Rpn9p; n=2; Saccharomycetales|Rep: Likely 26S
proteasome regulatory particle subunit Rpn9p - Candida
albicans (Yeast)
Length = 416
Score = 41.5 bits (93), Expect = 0.006
Identities = 20/51 (39%), Positives = 35/51 (68%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
K+ I+ L+E+ S+ +KLSF+ I+ + P+D+VEL+I+K ++ LIE
Sbjct: 324 KLTIMALLELV----SADKKLSFDIISEKTNTPIDQVELIIIKTMSLHLIE 370
>UniRef50_Q4WLP7 Cluster: Proteasome regulatory particle subunit
(RpnI), putative; n=18; Ascomycota|Rep: Proteasome
regulatory particle subunit (RpnI), putative -
Aspergillus fumigatus (Sartorya fumigata)
Length = 405
Score = 41.5 bits (93), Expect = 0.006
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
KI++ L EM F + R L+F I+ E ++ +E+E L+MKAL+ L++
Sbjct: 299 KISLSALTEMVFRRPPHDRNLTFASISSETKVKPEEIEHLVMKALSLGLLK 349
>UniRef50_UPI00015B4210 Cluster: PREDICTED: similar to 26S
proteasome non-ATPase regulatory subunit 13; n=1;
Nasonia vitripennis|Rep: PREDICTED: similar to 26S
proteasome non-ATPase regulatory subunit 13 - Nasonia
vitripennis
Length = 311
Score = 40.7 bits (91), Expect = 0.011
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = -3
Query: 347 KLSFEEIAREARIPLDEVELLIMKALAEKLI 255
+L+F EI++E +P+ EVELL+MKALA+ L+
Sbjct: 224 QLTFAEISQETHLPIGEVELLVMKALAQGLV 254
>UniRef50_Q387U2 Cluster: Proteasome regulatory non-ATP-ase subunit
9; n=3; Trypanosoma|Rep: Proteasome regulatory
non-ATP-ase subunit 9 - Trypanosoma brucei
Length = 405
Score = 39.5 bits (88), Expect = 0.025
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
K+ ++ L+ + F ++R +F+ IAR +PL VE L++ ALA+ +I
Sbjct: 300 KVRLMALLHLVFYTPFNERTFAFDLIARRCAVPLKRVEPLLLAALAQGII 349
>UniRef50_Q5KLK2 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 412
Score = 39.5 bits (88), Expect = 0.025
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = -3
Query: 404 KIAILCLMEMAFNK--SSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
KI ++ L++ F + S R ++F+ I R+P+ EVE LIMKAL+ LI
Sbjct: 300 KICLMALIQTVFARPRDGSSRLMTFQSIGEATRLPVHEVEHLIMKALSLGLI 351
>UniRef50_Q04062 Cluster: 26S proteasome regulatory subunit RPN9;
n=6; Saccharomycetales|Rep: 26S proteasome regulatory
subunit RPN9 - Saccharomyces cerevisiae (Baker's yeast)
Length = 393
Score = 39.5 bits (88), Expect = 0.025
Identities = 20/51 (39%), Positives = 34/51 (66%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIE 252
KI ++ L+E F K+ R LSFE+I++ +P D VE L+M+A++ L++
Sbjct: 290 KICLMTLIETVFVKNI--RMLSFEDISKATHLPKDNVEHLVMRAISLGLLK 338
>UniRef50_A7PBB9 Cluster: Chromosome chr16 scaffold_10, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr16 scaffold_10, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 170
Score = 37.1 bits (82), Expect = 0.13
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = -3
Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIEDI 246
KI ILCLME+ F S K++ IA ++ + VE +MK+L LIE I
Sbjct: 106 KINILCLMELIF---SHPLKIALHIIAESMKLSIANVEYFLMKSLLVHLIEGI 155
>UniRef50_Q1JSW4 Cluster: 26s proteasome regulatory subunit rpn9,
putative; n=1; Toxoplasma gondii|Rep: 26s proteasome
regulatory subunit rpn9, putative - Toxoplasma gondii
Length = 511
Score = 36.3 bits (80), Expect = 0.23
Identities = 15/36 (41%), Positives = 27/36 (75%)
Frame = -3
Query: 362 SSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
S++ R LSF+ IA ++ D+VE L+M+A+++KL+
Sbjct: 418 SAASRSLSFDLIANSCKVSEDDVEHLVMRAMSQKLM 453
>UniRef50_UPI0000E23EF2 Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 200
Score = 35.5 bits (78), Expect = 0.41
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -3
Query: 194 WPGQAPC*RQRGWTRGERRSPRPP 123
WPGQA RQR W GER++ RPP
Sbjct: 39 WPGQA---RQRSWREGERKALRPP 59
>UniRef50_Q9N4C2 Cluster: Probable cleavage and polyadenylation
specificity factor subunit 1; n=2; Caenorhabditis|Rep:
Probable cleavage and polyadenylation specificity factor
subunit 1 - Caenorhabditis elegans
Length = 1454
Score = 33.9 bits (74), Expect = 1.2
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -3
Query: 386 LMEMAFNKSSSQRKLSFEEIAREARIPLDEVELL--IMKALAEKLIE 252
L+++ + +RK ++ A+EA +P DE E L MK L E+++E
Sbjct: 809 LVDLTVEEEEKERKAKAQQAAKEASVPTDEAEQLNTEMKQLCERVLE 855
>UniRef50_A2QPJ0 Cluster: Putative uncharacterized protein; n=1;
Aspergillus niger|Rep: Putative uncharacterized protein
- Aspergillus niger
Length = 251
Score = 31.5 bits (68), Expect = 6.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 270 QSLHDEEFDFVEGYSGFTGYLLERQLPL 353
QS HD ++ + GY G+ YLLER P+
Sbjct: 194 QSGHDPKYHGIHGYMGYQYYLLERLQPI 221
>UniRef50_Q0DY34 Cluster: Os02g0718600 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os02g0718600 protein -
Oryza sativa subsp. japonica (Rice)
Length = 83
Score = 31.1 bits (67), Expect = 8.7
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -3
Query: 170 RQRGWTRGERRSPRPPTCWLPCSPTSSSLEDSFRDQRE 57
R R RG RR R P LPC P+SS + R RE
Sbjct: 20 RSRARPRGARRRRRWPWRALPCCPSSSRVGSCTRQARE 57
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 302,622,149
Number of Sequences: 1657284
Number of extensions: 4538539
Number of successful extensions: 13040
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 12631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13032
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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