Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0002
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596...    50   9e-07
01_05_0085 - 17995800-17995985,17996724-17996823,17996919-179971...    48   2e-06
07_03_0831 - 21810002-21810319,21810423-21810573,21810660-218108...    30   0.80 
06_01_0015 + 181155-181323,182074-182195,182425-182449,182664-18...    28   3.2  
02_01_0206 + 1388149-1388330,1388527-1388629,1388896-1388964,138...    27   5.6  
12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497           27   7.5  
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293...    27   7.5  
07_03_1432 - 26508135-26508881,26509301-26509708                       27   7.5  

>03_02_0154 +
           5967512-5967658,5968206-5968652,5968766-5968846,
           5969058-5969075,5969552-5969748,5969844-5969943,
           5970676-5970861
          Length = 391

 Score = 49.6 bits (113), Expect = 9e-07
 Identities = 23/53 (43%), Positives = 35/53 (66%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIEDI 246
           KI ILCLME+ F+++S  R +    IA   ++ + +VE L+MK+L+  LIE I
Sbjct: 285 KINILCLMEIIFSRASEDRTIPLSVIAERTKLSISDVEYLLMKSLSVHLIEGI 337


>01_05_0085 -
           17995800-17995985,17996724-17996823,17996919-17997115,
           17997836-17997916,17998046-17998492,17998774-17998920
          Length = 385

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 23/53 (43%), Positives = 33/53 (62%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIEDI 246
           KI ILCLME+ F + S  R +    IA   ++ + +VE L+MK+L+  LIE I
Sbjct: 279 KINILCLMEIIFTRPSEDRTIPLSVIAERTKLSISDVEYLLMKSLSVHLIEGI 331


>07_03_0831 -
           21810002-21810319,21810423-21810573,21810660-21810897,
           21811011-21811221,21811336-21811559,21811696-21811806,
           21813265-21813636,21813810-21814782
          Length = 865

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 137 SPRPPTCWLPCSPTSSSLEDSFRDQRE 57
           +PRPPT  L C+ +SS  +  +RD+ E
Sbjct: 824 TPRPPTFTLQCTSSSSGRDMYYRDKEE 850


>06_01_0015 +
           181155-181323,182074-182195,182425-182449,182664-182828,
           183203-183321
          Length = 199

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 131 RPPTCWLPCSPTSSSLEDSFRDQR 60
           RPP C   C+P S SL   +R +R
Sbjct: 9   RPPPCVATCTPPSPSLSSQWRRRR 32


>02_01_0206 +
           1388149-1388330,1388527-1388629,1388896-1388964,
           1389684-1389803,1390352-1390482,1390840-1390881,
           1390961-1391138,1391241-1391319,1391441-1391610,
           1392503-1392629,1392731-1392846,1392926-1393033,
           1393118-1393180,1393283-1393456,1393814-1393978
          Length = 608

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 170 RQRGWTRGERRSPRPPTCWLPCSPTSSSLEDS 75
           R+RGW+ G R + R  T    CS T+SS   S
Sbjct: 10  RRRGWSSGTRGTSRGGTRSGGCSATASSATPS 41


>12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497
          Length = 800

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 253 SINFSAKAFMMRSSTSSRGILASRAI 330
           S+N+S   FM R+ TS++G+L +  +
Sbjct: 422 SLNYSVAQFMSRTITSTKGLLQNLVV 447


>08_02_1047 -
           23927822-23928112,23928736-23928981,23929119-23929395,
           23929522-23929799,23931147-23931572
          Length = 505

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 194 WPGQAPC*RQRGWTRGE--RRSPRPPTCW 114
           WP +AP  R+ G  R    R +PRPP+ W
Sbjct: 16  WPARAP--RRGGLLRARAVRAAPRPPSKW 42


>07_03_1432 - 26508135-26508881,26509301-26509708
          Length = 384

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 137 SPRPPTCWLPCSPTSSS 87
           SP PPT +LP SPT  S
Sbjct: 62  SPSPPTTYLPPSPTPPS 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,469,785
Number of Sequences: 37544
Number of extensions: 134327
Number of successful extensions: 436
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)