Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0002
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical pr...    55   2e-08
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ...    34   0.045

>Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical
           protein T06D8.8 protein.
          Length = 387

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 24/50 (48%), Positives = 38/50 (76%)
 Frame = -3

Query: 404 KIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLI 255
           KI ++ +ME+A ++ +  R +SF+EIA + +IP DEVE L+MKAL++ LI
Sbjct: 280 KIRLMAVMELAVSRPTKARSVSFKEIATKCQIPFDEVEFLVMKALSKDLI 329


>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
           protein Y76B12C.7 protein.
          Length = 1454

 Score = 33.9 bits (74), Expect = 0.045
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -3

Query: 386 LMEMAFNKSSSQRKLSFEEIAREARIPLDEVELL--IMKALAEKLIE 252
           L+++   +   +RK   ++ A+EA +P DE E L   MK L E+++E
Sbjct: 809 LVDLTVEEEEKERKAKAQQAAKEASVPTDEAEQLNTEMKQLCERVLE 855


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,881,716
Number of Sequences: 27780
Number of extensions: 103998
Number of successful extensions: 194
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)